POA_example: Preoptic_Area

In scMappR: Single Cell Mapper

Preoptic_Area

Description

Toy data for tissue_scMappR_custom, tissue_scMappR_internal, generes_to_heatmap.

Usage

data(POA_example)

Format

A list containing three objects: summary statistics of cell-type markers, a signature matrix of odds ratios, and a signature matrix of ranks.

POA_generes

A list of 27 data frames containing (up to 30) cell-type markers. Each element of the list is a dataframe where rows are genes, and columns are p-value, log2FC, percentage of cells expressing gene in cell-type, percentage of cells expressing gene in other cell-types, and FDR adjusted p-value.

POA_OR_signature

A 266 x 27 matrix where rows are genes, columns are cell-types and matrix is filled with the odds-ratio that a gene is in each cell-type.

POA_Rank_signature

A 266 x 27 matrix of matrix where rows are genes, columns are cell-types and matrix is filled with the rank := -log10(P_fdr) that a gene is in each cell-type.

Details

A named list called POA_example (pre-optic area example) containing three objects, POA_generes: a list of truncated dataframes containing summary statistics for each cell-type marker, POA_OR_signature a truncated signature matrix of odds ratio's for cell-types in the POA, and POA_Rank_signature a truncated signature matrix of -log10(Padj) for cell-type markers in the POA.

Examples

data(POA_example)

scMappR documentation built on July 9, 2023, 6:26 p.m.