example_data_compare: Example Input Data for Compare Mode Analysis

In scPOEM: Single-Cell Meta-Path Based Omic Embedding

Example Input Data for Compare Mode Analysis

Description

A list containing example single-cell multi-omics data used in "compare" mode of the scPOEM package.

Usage

data(example_data_compare)

Format

A named list of length 2. Each element is itself a named list with the following components:

X

The scATAC-seq data, sparse matrix.

Y

The scRNA-seq data, sparse matrix.

peak_data

A data.frame containing peak information.

gene_data

A data.frame containing gene information (must contain column "gene_name").

cell_data

A data.frame containing cell metadata.

neibor_peak

The peak IDs within a certain range of each gene, must have cols c("gene_name", "start_use", "end_use"). The id numbers in "start_use" and "end_use" are start from 0.

genome

The genome length for the species.

Examples

data(example_data_compare)

scPOEM documentation built on Aug. 28, 2025, 9:09 a.m.