updateNeurons: Update the classifications of neurons from SCALPEL.

In scalpel: Processes Calcium Imaging Data

Description

This function allows the user to update the classifications of neurons, based on manual sorting of plots saved as a result of running reviewNeurons.

Usage

updateNeurons(scalpelOutput, neuronSet)

Arguments

scalpelOutput	An object returned by one of the SCALPEL functions: scalpel, scalpelStep2, or scalpelStep3.
neuronSet	The set of neurons that should be reviewed: use "A" for those resulting from scalpelStep2 and saved as scalpelOutput$A, or use "Afilter" for those resulting from scalpelStep3 and saved as scalpelOutput$Afilter. This argument is ignored if the class of scalpelOutput is scalpelStep2.

Value

None

See Also

reviewNeurons, reviewNeuronsMoreFrames, reviewOverlappingNeurons

Examples

## Not run: 
### many of the functions in this package are interconnected so the
### easiest way to learn to use the package is by working through the vignette,
### which is available at ajpete.com/software

#assumes you have run the example for the "reviewNeurons" function

updateNeurons(scalpelOutput = scalpelOutput, neuronSet = "Afilter")

## End(Not run)

scalpel documentation built on Feb. 3, 2021, 9:05 a.m.