Description Usage Arguments Value See Also Examples
View source: R/SCALPEL_reviewNeurons.R
We plot random frames from the video processed in Step 0 of SCALPEL with shading to indicate the smallest of the automatically chosen thresholds that will be used to perform image segmentation in Step 1 of SCALPEL. The user is given the option to try out different thresholds and if desired, update the threshold to use.
1 | updateThreshold(step0Output)
|
step0Output |
An object of class |
An object identical to step0Output
, except it may (depending on the user's decision) have lowThreshold
updated.
1 2 3 4 5 6 7 8 9 10 11 | ## Not run:
### many of the functions in this package are interconnected so the
### easiest way to learn to use the package is by working through the vignette,
### which is available at ajpete.com/software
#assumes you have run the example for the "scalpel" function
#update the smallest threshold used for image segmentation in Step 1
scalpelOutput = updateThreshold(step0Output = scalpelOutput)
## End(Not run)
|
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