Files in scapGNN
Graph Neural Network-Based Framework for Single Cell Active Pathways and Gene Modules Analysis
MD5
NAMESPACE
DESCRIPTION
R/scPathway.R
R/cpGModule.R
R/LTMG.R
R/plotCCNetwork.R
R/Preprocessing.R
R/plotGANetwork.R
R/ConNetGNN.R
R/dataset.R
R/InteNet.R
R/plotMulPhenGM.R
R/utils.R
inst/doc/vignette.Rmd
inst/doc/vignette.R
inst/doc/vignette.html
inst/extdata/flow_diagram2.png
inst/extdata/KEGG_human.gmt
inst/extdata/heatmap.png
inst/extdata/scapGNN_env.yaml
inst/extdata/KEGG_mouse.gmt
inst/extdata/c2.kegg.gmt
inst/extdata/flow_diagram1.png
inst/python/AutoEncoder.py
inst/python/AutoEncoder_GPU.py
inst/python/GraphAutoEncoder.py
inst/python/GraphAutoEncoder_GPU.py
build/vignette.rds
vignettes/vignette.Rmd
data/H9_36h_cpGM_data.rda
data/scPathway_data.rda
data/Hv_exp.rda
data/ATAC_net.rda
data/H9_24h_cpGM_data.rda
data/H9_0h_cpGM_data.rda
data/RNA_net.rda
data/ConNetGNN_data.rda
data/RNA_ATAC_IntNet.rda
man/RWR.Rd
man/LTMG-class.Rd
man/RNA_net.Rd
man/ConNetGNN.Rd
man/H9_0h_cpGM_data.Rd
man/scPathway_data.Rd
man/Preprocessing.Rd
man/Hv_exp.Rd
man/H9_36h_cpGM_data.Rd
man/plotMulPhenGM.Rd
man/create_scapGNN_env.Rd
man/isLoaded.Rd
man/plotGANetwork.Rd
man/plotCCNetwork.Rd
man/ConNetGNN_data.Rd
man/BIC_ZIMG.Rd
man/RunLTMG.Rd
man/InteNet.Rd
man/load_path_data.Rd
man/instPyModule.Rd
man/BIC_LTMG.Rd
man/Fit_LTMG.Rd
man/H9_24h_cpGM_data.Rd
man/Pure_CDF.Rd
man/RNA_ATAC_IntNet.Rd
man/cpGModule.Rd
man/LTMG.Rd
man/ATAC_net.Rd
man/scPathway.Rd
man/Global_Zcut.Rd
