propagateLabelsSolver: Propagate labels using Zhu, Ghahramani, Lafferty (2003)...

In sccore: Core Utilities for Single-Cell RNA-Seq

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" <http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf>

Description

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" <http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf>

Usage

propagateLabelsSolver(graph, labels, solver = "mumps")

Arguments

graph	igraph graph object Graph input
labels	vector of factor or character labels, named by cell names
solver	Method of solver to use (default="mumps"), either "Matrix" or "mumps" (i.e. "rmumps::Rmumps")

Value

result from Matrix::solve() or rmumps::Rmumps

Examples

propagateLabelsSolver(conosGraph, labels=cellAnnotations)

sccore documentation built on April 14, 2025, 1:08 a.m.