scicomptools
- Tools Developed by the NCEAS Scientific Computing Support TeamThe goal of scicomptools
is to house all of the standalone functions
written by the National Center for Ecological Analysis and Synthesis
(NCEAS) Scientific Computing Team staff that lack a specific project.
Currently contains various tools to import, summarize, and visualize
data. Non-function scripts created by this team are part of the
scicomptasks
repository.
You can install the development version of scicomptools
from
GitHub with:
# install.packages("devtools")
devtools::install_github("NCEAS/scicomptools")
Or download from CRAN with:
install.packages("scicomptools")
stat_extract
Extracts core summary statistics for model fit
objects returned by the following functions: lmerTest::lmer
,
stats::lm
, stats::nls
, stats::t.test
, nlme::lme
,
ecodist::MRM
, and RRPP::trajectory.analysis
drive_toc
: Identifies the complete folder hierarchy within a
user-supplied URL for a Google Drive folder. Useful in generating a
table of contents for a Google Drive. Also allows exclusion of folders
by name if there are folders that you would not want included in a
table of contentsread_xl_sheets
: Reads in all the sheets in a supplied Microsoft
Excel workbook and returns a list of those contents
read_xl_format
: Identifies the formatting of every cell in a
supplied Microsoft Excel workbook (including comment text)
word_cloud_prep
: Performs text mining on a given text column of
a dataframe to create a dataframe that is ready for word cloud
creation
word_cloud_plot
: Performs text mining (using word_cloud_prep
)
and creates a simple ggplot2
word cloud (for those who don’t want
to handle their own plotting aesthetics)
wd_loc
: Allows user to easily specify file paths both for local
and remote work and then toggle between them in the same script as
needed. Useful when work is being done both in local computers and on
a remote servertoken_check
: Checks for whether a token for the supplied API can
be found for your current R session. For example, Qualtrics allows
direct acquisition of data from R if you have a token and your R
session “knows” that string. This function quickly checks whether
you’d be able to use that workflow (currently only supports search for
Qualtrics and GitHub tokens but could be easily expanded!)Any scripts or data that you put into this service are public.
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