cheese_abundance: Abundance of Fungal Communities in Cheese

In scimo: Extra Recipes Steps for Dealing with Omics Data

Abundance of Fungal Communities in Cheese

Description

Fungal community abundance of 74 ASVs sampled from the surface of three different French cheeses.

Usage

data("cheese_abundance", package = "scimo")

data("cheese_taxonomy", package = "scimo")

Format

For cheese_abundance, a tibble with columns:

sample

Sample ID.

cheese

Appellation of the cheese. One of Saint-Nectaire, Livarot or Epoisses.

rind_type

One of Natural or Washed.

other columns

Count of the ASV.

For cheese_taxonomy, a tibble with columns:

asv

Amplicon Sequence Variant (ASV) ID.

lineage

Character corresponding to a standard concatenation of taxonomic clades.

other columns

Clade to which the ASV belongs.

Source

This dataset came from \Sexpr[results=rd]{tools:::Rd_expr_doi("10.24072/pcjournal.321")}.

Examples

data("cheese_abundance", package = "scimo")
cheese_abundance
data("cheese_taxonomy", package = "scimo")
cheese_taxonomy

scimo documentation built on June 24, 2024, 5:17 p.m.