pedcan_expression: Gene Expression of Pediatric Cancer
In scimo: Extra Recipes Steps for Dealing with Omics Data
pedcan_expression R Documentation
Gene Expression of Pediatric Cancer
Description
Gene expression of 108 CCLE cell lines from 5 different pediatric cancers.
Usage
data("pedcan_expression", package = "scimo")
Format
A tibble with columns:
- cell_line
Cell line name.
- sex
One of Male, Female or Unknown.
- event
One of Primary, Metastasis or Unknown.
- disease
One of Neuroblastoma, Ewing Sarcoma,
Rhabdomyosarcoma, Embryonal Tumor or Osteosarcoma.
- other columns
Expression of the gene, given in log2(TPM + 1).
Source
This dataset is generated from DepMap Public 23Q4 primary files.
https://depmap.org/portal/download/all/.
Examples
data("pedcan_expression", package = "scimo")
pedcan_expression
scimo documentation built on June 24, 2024, 5:17 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| pedcan_expression | R Documentation |
Gene Expression of Pediatric Cancer
Description
Gene expression of 108 CCLE cell lines from 5 different pediatric cancers.
Usage
data("pedcan_expression", package = "scimo")
Format
A tibble with columns:
- cell_line
Cell line name.
- sex
One of
Male,FemaleorUnknown.- event
One of
Primary,MetastasisorUnknown.- disease
One of
Neuroblastoma,Ewing Sarcoma,Rhabdomyosarcoma,Embryonal TumororOsteosarcoma.- other columns
Expression of the gene, given in log2(TPM + 1).
Source
This dataset is generated from DepMap Public 23Q4 primary files. https://depmap.org/portal/download/all/.
Examples
data("pedcan_expression", package = "scimo")
pedcan_expression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.