Man pages for scrime
Analysis of High-Dimensional Categorical Data Such as SNP Data
| abf | Approximate Bayes Factor |
| analyse.models | Summarize MCMC sample of Bayesian logic regression models |
| buildSNPannotation | Construct Annotation for Affymetrix SNP Chips |
| colEpistatic | Cordell's Test for Epistatic Interactions |
| computeContCells | Pairwise Contingency Tables |
| computeContClass | Rowwise Contigency Tables |
| fblr | Full Bayesian Logic Regression for SNP Data |
| gknn | Generalized k Nearest Neighbors |
| identifyMonomorphism | Identification of Constant Variables |
| knncatimpute | Missing Value Imputation with kNN |
| knncatimputeLarge | Missing Value Imputation with kNN for High-Dimensional Data |
| pamCat | Prediction Analysis of Categorical Data |
| pcc | Pearson's Contingency Coefficient |
| predictFBLR | Predict Case Probabilities with Full Bayesian Logic... |
| predict.pamCat | Predict Method for pamCat Objects |
| recodeAffySNP | Recoding of Affymetrix SNP Values |
| recodeSNPs | Recoding of SNP Values |
| rowCATTs | Rowwise Cochran-Armitage Trend Test Based on Tables |
| rowChisq2Class | Rowwise Pearson's ChiSquare Test Based on Tables |
| rowChisqStats | Rowwise Pearson's ChiSquare Statistic |
| rowCors | Rowwise Correlation with a Vector |
| rowFreqs | Rowwise Frequencies |
| rowHWEs | Rowwise Test for Hardy-Weinberg Equilibrium |
| rowMAFs | Rowwise Minor Allele Frequency |
| rowMsquares | Rowwise Linear Trend Test Based on Tables |
| rowScales | Rowwise Scaling |
| rowTables | Rowwise Tables |
| rowTrendFuzzy | Trend Test for Fuzzy Genotype Calls |
| rowTrendStats | Rowwise Linear Trend Tests |
| scrime-internal | Internal scrime functions |
| shortenGeneDescription | Shorten the Gene Description |
| showChanges | Displaying Changes |
| simulateSNPcatResponse | Simulation of SNP Data with Categorical Response |
| simulateSNPglm | Simulation of SNP data |
| simulateSNPs | Simulation of SNP data |
| smc | Simple Matching Coefficient and Cohen's Kappa |
| snp2bin | Transformation of SNPs to Binary Variables |
| summary.simSNPglm | Summarizing a simSNPglm object |
