Description Usage Arguments Details Value See Also Examples
Functions to extract results and breakpoints from a smw
object
1 2 3 4 5 6 |
smw |
An object of class |
w |
Numeric. A "target" window size from which results will be extracted (see Details). Only effective if the |
index |
The result to be extracted:
|
sig |
Significance test for detecting dissimilarity values that differs significantly from those appearing in a random pattern. The following tests are considered with default to
|
z |
The critical value for the significance of z-values. Defaults to |
BPs |
Defines if the breakpoints should be chosen as those sample positions corresponding to the maximum dissimilarity in a sequence of significant values ( |
seq.sig |
The maximum length of consecutive, significant values of dissimilarity that will be considered in defining the community breakpoints. Defaults to |
dp |
An object of class |
If the smw
object contains results from multiple window sizes, the DP table will be based on the average Z-score over the set of analysed window sizes. Available methods for class "dp"
are print
, bp
and plot
.
The argument w
is optional. If the smw
object is length 1, w
is ignored. If length(smw)>1
and w
is NULL
, the function will extract the dissimilarity profile averaged over the set of window sizes.
"extract"
returns a result called by the argument index
(see Details);
"bp"
returns the locations of the breakpoints.
1 2 3 4 5 6 7 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.