Description Usage Arguments Details Value Author(s) See Also Examples
Plot results from smw
and dp
objects. The command is a shortcut for extracting and plotting SMW
resuts. Auxiliary arguments from extract
(i.e. sig
, z
, BPs
and seq.sig
) can be passed to plot.smw
. The auxilary method bgDP
is available for the returned dp
object when the argument bg
is not NULL (see Details).
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x |
An object of class |
w |
The window size from which results will be plotted. Only effective if |
sig |
Significance test for detecting dissimilarity values that differs significantly from those appearing in a random pattern. If
|
z |
The critical value for the significance of z-values. Defaults to |
BPs |
Defines if the breakpoints should be chosen as those sample positions corresponding to the maximum dissimilarity in a sequence of significant values ( |
seq.sig |
The maximum length of consecutive, significant values of dissimilarity that will be considered in defining the community breakpoints. Defaults to |
w.effect |
Logical, if |
values |
Character. |
pchs |
A numerical vector of the form |
cols |
Vector of length 3 specifying the colors of the plot in the same way as the pch argument. Defaults to |
bg |
Optional. Sets background colors according to the breakpoints. It can be expressed either by a vector of colors or by the name of a pallet function (e.g. |
bg_alpha |
Factor modifying the opacity alpha of the backgroud [0,1]. |
wcols |
Sets the colors for the window sizes (lines) when |
legend |
Logical. Should a default legend appear? |
... |
Further graphical parameters. |
dp |
An object of class |
If bg
is not NULL
, the attribute params$bg
is added to the returned dp
. This attribute contains the sample colors used by the argument bg
. The auxilary method bgDP
can be used for accessing this color vector.
The function returns invisibly an object of class "dp"
(see Details).
Danilo Candido Vieira
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