seqMeta: Meta-Analysis of Region-Based Tests of Rare DNA Variants

Computes necessary information to meta analyze region-based tests for rare genetic variants (e.g. SKAT, T1) in individual studies, and performs meta analysis.

AuthorArie Voorman, Jennifer Brody, Han Chen, Thomas Lumley, Brian Davis
Date of publication2017-02-09 15:24:14
MaintainerBrian Davis <Brian.Davis281@gmail.com>
LicenseGPL (>= 2)
Version1.6.7
https://github.com/DavisBrian/seqMeta

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Files

seqMeta
seqMeta/inst
seqMeta/inst/doc
seqMeta/inst/doc/seqMeta.Rnw
seqMeta/inst/doc/seqMeta.R
seqMeta/inst/doc/seqMeta.pdf
seqMeta/tests
seqMeta/tests/testthat.R
seqMeta/tests/testthat
seqMeta/tests/testthat/test-prepSNPInfo.R
seqMeta/tests/testthat/test-prepScores2.R
seqMeta/tests/testthat/test-examples.R
seqMeta/tests/testthat/test-bugfixes.R
seqMeta/tests/testthat/test-issue2.R
seqMeta/tests/testthat/test-issue1.R
seqMeta/src
seqMeta/src/chinv2.c
seqMeta/src/survS.h
seqMeta/src/chsolve2.c
seqMeta/src/survproto.h
seqMeta/src/coxfit6.c
seqMeta/src/cholesky2.c
seqMeta/src/coxsafe.c
seqMeta/src/dmatrix.c
seqMeta/NAMESPACE
seqMeta/NEWS.md
seqMeta/data
seqMeta/data/SNPInfo.rda
seqMeta/data/seqMetaExample.rda
seqMeta/data/datalist
seqMeta/R
seqMeta/R/pchisqsum2.R seqMeta/R/utils.R seqMeta/R/prepAdjust.R seqMeta/R/c.seqMeta.R seqMeta/R/burdenMeta.R seqMeta/R/seqMeta.R seqMeta/R/check_format_skat.R seqMeta/R/singlesnpMeta.R seqMeta/R/coxlr.fit.R seqMeta/R/skatOMeta.R seqMeta/R/prepScores2.R seqMeta/R/prepCox.R seqMeta/R/skatMeta.R seqMeta/R/prepScores.R
seqMeta/vignettes
seqMeta/vignettes/seqMeta.Rnw
seqMeta/README.md
seqMeta/MD5
seqMeta/build
seqMeta/build/vignette.rds
seqMeta/DESCRIPTION
seqMeta/man
seqMeta/man/seqMetaExample.Rd seqMeta/man/singlesnpMeta.Rd seqMeta/man/burdenMeta.Rd seqMeta/man/prepScores2.Rd seqMeta/man/SNPInfo.Rd seqMeta/man/prepScores.Rd seqMeta/man/prepCondScores.Rd seqMeta/man/seqMeta.Rd seqMeta/man/skatMeta.Rd seqMeta/man/skatOMeta.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.