seqMeta: Meta-Analysis of Region-Based Tests of Rare DNA Variants

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Computes necessary information to meta analyze region-based tests for rare genetic variants (e.g. SKAT, T1) in individual studies, and performs meta analysis.

Author
Arie Voorman, Jennifer Brody, Han Chen, Thomas Lumley, Brian Davis
Date of publication
2016-09-26 16:47:10
Maintainer
Brian Davis <Brian.Davis281@gmail.com>
License
GPL (>= 2)
Version
1.6.6
URLs

View on CRAN

Man pages

burdenMeta
Meta analyze burden tests from multiple studies
prepCondScores
Run SKAT on data from a single cohort, conditional on...
prepScores
Prepare scores for region based (meta) analysis
prepScores2
Prepare scores for region based (meta) analysis
seqMeta
seqMeta: Meta-Analysis of Region-Based Tests of Rare DNA...
seqMetaExample
Example data for illustrating seqMeta
singlesnpMeta
Meta analyze single snp effects from multiple studies
skatMeta
Combine SKAT analyses from one or more studies
skatOMeta
Combine SKAT-O analyses from one or more studies.
SNPInfo
Illumina HumanExome BeadChip SNP Information file

Files in this package

seqMeta
seqMeta/inst
seqMeta/inst/doc
seqMeta/inst/doc/seqMeta.Rnw
seqMeta/inst/doc/seqMeta.R
seqMeta/inst/doc/seqMeta.pdf
seqMeta/tests
seqMeta/tests/testthat.R
seqMeta/tests/testthat
seqMeta/tests/testthat/test-prepSNPInfo.R
seqMeta/tests/testthat/test-prepScores2.R
seqMeta/tests/testthat/test-examples.R
seqMeta/tests/testthat/test-bugfixes.R
seqMeta/tests/testthat/test-issue2.R
seqMeta/tests/testthat/test-issue1.R
seqMeta/src
seqMeta/src/chinv2.c
seqMeta/src/survS.h
seqMeta/src/chsolve2.c
seqMeta/src/survproto.h
seqMeta/src/coxfit6.c
seqMeta/src/cholesky2.c
seqMeta/src/coxsafe.c
seqMeta/src/dmatrix.c
seqMeta/NAMESPACE
seqMeta/NEWS.md
seqMeta/data
seqMeta/data/SNPInfo.rda
seqMeta/data/seqMetaExample.rda
seqMeta/data/datalist
seqMeta/R
seqMeta/R/pchisqsum2.R
seqMeta/R/utils.R
seqMeta/R/prepAdjust.R
seqMeta/R/c.seqMeta.R
seqMeta/R/burdenMeta.R
seqMeta/R/seqMeta.R
seqMeta/R/check_format_skat.R
seqMeta/R/singlesnpMeta.R
seqMeta/R/coxlr.fit.R
seqMeta/R/skatOMeta.R
seqMeta/R/prepScores2.R
seqMeta/R/prepCox.R
seqMeta/R/skatMeta.R
seqMeta/R/prepScores.R
seqMeta/vignettes
seqMeta/vignettes/seqMeta.Rnw
seqMeta/README.md
seqMeta/MD5
seqMeta/build
seqMeta/build/vignette.rds
seqMeta/DESCRIPTION
seqMeta/man
seqMeta/man/seqMetaExample.Rd
seqMeta/man/singlesnpMeta.Rd
seqMeta/man/burdenMeta.Rd
seqMeta/man/prepScores2.Rd
seqMeta/man/SNPInfo.Rd
seqMeta/man/prepScores.Rd
seqMeta/man/prepCondScores.Rd
seqMeta/man/seqMeta.Rd
seqMeta/man/skatMeta.Rd
seqMeta/man/skatOMeta.Rd