Man pages for seqgendiff
RNA-Seq Generation/Modification for Simulation
| corassign | Group assignment that is correlated with latent factors. |
| effective_cor | Estimates the effective correlation. |
| est_sv | Estimate the surrogate variables. |
| fix_cor | Fixes an invalid target correlation. |
| permute_design | Permute the design matrix so that it is approximately... |
| poisthin | Apply Poisson thinning to a matrix of count data. |
| select_counts | Subsample the rows and columns of a count matrix. |
| seqgendiff-package | seqgendiff: RNA-Seq Generation/Modification for Simulation |
| summary.ThinData | Provide summary output of a ThinData S3 object. |
| thin_2group | Binomial thinning in the two-group model. |
| thin_all | Binomial thinning for altering read-depth. |
| thin_base | Base binomial thinning function. |
| ThinDataToDESeqDataSet | Converts a ThinData S3 object into a DESeqDataSet S4 object. |
| ThinDataToSummarizedExperiment | Converts a ThinData S3 object into a SummarizedExperiment S4... |
| thin_diff | Binomial thinning for differential expression analysis. |
| thin_gene | Binomial thinning for altering total gene expression levels |
| thin_lib | Binomial thinning for altering library size. |
| uncorassign | Group assignment independent of anything. |
