RNA-Seq Generation/Modification for Simulation

corassign | Group assignment that is correlated with latent factors. |

effective_cor | Estimates the effective correlation. |

est_sv | Estimate the surrogate variables. |

fix_cor | Fixes an invalid target correlation. |

permute_design | Permute the design matrix so that it is approximately... |

poisthin | Apply Poisson thinning to a matrix of count data. |

select_counts | Subsample the rows and columns of a count matrix. |

seqgendiff-package | seqgendiff: Sequence Generation/Modification for Differential... |

summary.ThinData | Provide summary output of a ThinData S3 object. |

thin_2group | Binomial thinning in the two-group model. |

thin_all | Binomial thinning for altering read-depth. |

thin_base | Base binomial thinning function. |

ThinDataToDESeqDataSet | Converts a ThinData S3 object into a DESeqDataSet S4 object. |

ThinDataToSummarizedExperiment | Converts a ThinData S3 object into a SummarizedExperiment S4... |

thin_diff | Binomial thinning for differential expression analysis. |

thin_gene | Binomial thinning for altering total gene expression levels |

thin_lib | Binomial thinning for altering library size. |

uncorassign | Group assignment independent of anything. |

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