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sequenza: Copy Number Estimation from Tumor Genome Sequencing Data
Tools to analyze genomic sequencing data from paired normal-tumor samples, including cellularity and ploidy estimation; mutation and copy number (allele-specific and total copy number) detection, quantification and visualization.
Getting started
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Package details |
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| Author | Francesco Favero [aut, cre] (<https://orcid.org/0000-0003-3684-2659>), Andrea Marion Marquard [rev] (<https://orcid.org/0000-0003-2928-6017>), Tejal Joshi [rev] (<https://orcid.org/0000-0002-0939-2982>), Aron Charles Eklund [aut, ths] (<https://orcid.org/0000-0003-0861-1001>) |
| Maintainer | Francesco Favero <favero.francesco@gmail.com> |
| License | GPL-3 |
| Version | 3.0.0 |
| URL | https://sequenzatools.bitbucket.io Mailing list: https://groups.google.com/forum/#!forum/sequenza-user-group |
| Package repository | View on CRAN |
| Installation |
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