API for sequenza
Copy Number Estimation from Tumor Genome Sequencing Data

Global functions
CP.example	Man page
baf.bayes	Man page
baf.model.fit	Man page
baf.model.points	Man page
baf.types.matrix	Man page
chromosome.view	Man page
cp.plot	Man page
cp.plot.contours	Man page
example.seqz	Man page
find.breaks	Man page
gc.sample.stats	Man page
gc.summary.plot	Man page
genome.view	Man page
get.ci	Man page
mean_gc	Man page
median_gc	Man page
model.points	Man page
mufreq.bayes	Man page
mufreq.model.fit	Man page
mufreq.model.points	Man page
mufreq.types.matrix	Man page
mutation.table	Man page
plotWindows	Man page
read.acgt	Man page
read.seqz	Man page
segment.breaks	Man page
sequenza.extract	Man page
sequenza.fit	Man page
sequenza.results	Man page
theoretical.baf	Man page
theoretical.depth.ratio	Man page
theoretical.mufreq	Man page
types.matrix	Man page
windowBf	Man page
windowValues	Man page