Man pages for sequenza
Copy Number Estimation from Tumor Genome Sequencing Data
| baf.model.fit | Model fitting using maximum a posteriori inference |
| bayes | Model allele-specific copy numbers with specified cellularity... |
| breaks | Segmentation of sequencing data using an allele-specific copy... |
| chromosome.view | A graphical representation of multiple chromosomal features |
| CP.data | Example of cellularity and ploidy results |
| cp.plot | Plot log-posterior probability for the output of the... |
| example.seqz | Example "seqz" data |
| gc | Collect display and correct GC-content related coverage bias |
| model_points | Generate B-allele frequency, mutation frequency and depth... |
| mutations | Identify mutations |
| plotWindows | Plot a binned values of a chromosome |
| read_seqz | Read a seqz or acgt format file |
| theoretical | Calculates cellularity and ploidy dependent model points |
| type_matrix | Creates a matrix of type tags |
| windowValues | Bins sequencing data for plotting |
| workflow | Sequenza convenience functions for standard analysis |
