tidyverse: Tidyverse methods for sf objects (remove .sf suffix!)

Description Usage Arguments Details Value Examples

Description

Tidyverse methods for sf objects. Geometries are sticky, use as.data.frame to let dplyr's own methods drop them. Use these methods without the .sf suffix and after loading the tidyverse package with the generic (or after loading package tidyverse).

Usage

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filter.sf(.data, ..., .dots)

arrange.sf(.data, ..., .dots)

group_by.sf(.data, ..., add = FALSE)

ungroup.sf(x, ...)

mutate.sf(.data, ..., .dots)

transmute.sf(.data, ..., .dots)

select.sf(.data, ...)

rename.sf(.data, ...)

slice.sf(.data, ..., .dots)

summarise.sf(.data, ..., .dots, do_union = TRUE)

distinct.sf(.data, ..., .keep_all = FALSE)

gather.sf(data, key, value, ..., na.rm = FALSE, convert = FALSE,
  factor_key = FALSE)

spread.sf(data, key, value, fill = NA, convert = FALSE, drop = TRUE,
  sep = NULL)

sample_n.sf(tbl, size, replace = FALSE, weight = NULL,
  .env = parent.frame())

sample_frac.sf(tbl, size = 1, replace = FALSE, weight = NULL,
  .env = parent.frame())

nest.sf(data, ..., .key = "data")

separate.sf(data, col, into, sep = "[^[:alnum:]]+", remove = TRUE,
  convert = FALSE, extra = "warn", fill = "warn", ...)

unite.sf(data, col, ..., sep = "_", remove = TRUE)

unnest.sf(data, ..., .preserve = NULL)

inner_join.sf(x, y, by = NULL, copy = FALSE, suffix = c(".x", ".y"),
  ...)

left_join.sf(x, y, by = NULL, copy = FALSE, suffix = c(".x", ".y"),
  ...)

right_join.sf(x, y, by = NULL, copy = FALSE, suffix = c(".x", ".y"),
  ...)

full_join.sf(x, y, by = NULL, copy = FALSE, suffix = c(".x", ".y"),
  ...)

semi_join.sf(x, y, by = NULL, copy = FALSE, suffix = c(".x", ".y"),
  ...)

anti_join.sf(x, y, by = NULL, copy = FALSE, suffix = c(".x", ".y"),
  ...)

Arguments

.data

data object of class sf

...

other arguments

.dots

see corresponding function in package dplyr

add

see corresponding function in dplyr

x

tbls to join

do_union

logical; in case summary does not create a geometry column, should geometries be created by unioning using st_union, or simply by combining using st_combine? Using st_union resolves internal boundaries, but in case of unioning points, this will likely change the order of the points; see Details.

.keep_all

see corresponding function in dplyr

data

see original function docs

key

see original function docs

value

see original function docs

na.rm

see original function docs

convert

see original function docs

factor_key

see original function docs

fill

see original function docs

drop

see original function docs

sep

see original function docs

tbl

see original function docs

size

see original function docs

replace

see original function docs

weight

see original function docs

.env

see original function docs

.key

see nest

col

see separate

into

see separate

remove

see separate

extra

see separate

.preserve

see unnest

y

tbls to join

by

a character vector of variables to join by. If NULL, the default, *_join() will do a natural join, using all variables with common names across the two tables. A message lists the variables so that you can check they're right (to suppress the message, simply explicitly list the variables that you want to join).

To join by different variables on x and y use a named vector. For example, by = c("a" = "b") will match x.a to y.b.

copy

If x and y are not from the same data source, and copy is TRUE, then y will be copied into the same src as x. This allows you to join tables across srcs, but it is a potentially expensive operation so you must opt into it.

suffix

If there are non-joined duplicate variables in x and y, these suffixes will be added to the output to disambiguate them. Should be a character vector of length 2.

Details

select keeps the geometry regardless whether it is selected or not; to deselect it, first pipe through as.data.frame to let dplyr's own select drop it.

In case one or more of the arguments (expressions) in the summarise call creates a geometry list-column, the first of these will be the (active) geometry of the returned object. If this is not the case, a geometry column is created, depending on the value of do_union.

In case do_union is FALSE, summarise will simply combine geometries using c.sfg. When polygons sharing a boundary are combined, this leads to geometries that are invalid; see for instance https://github.com/r-spatial/sf/issues/681.

distinct gives distinct records for which all attributes and geometries are distinct; st_equals is used to find out which geometries are distinct.

nest assumes that a simple feature geometry list-column was among the columns that were nested.

Value

an object of class sf

Examples

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library(dplyr)
nc = st_read(system.file("shape/nc.shp", package="sf"))
nc %>% filter(AREA > .1) %>% plot()
# plot 10 smallest counties in grey:
st_geometry(nc) %>% plot()
nc %>% select(AREA) %>% arrange(AREA) %>% slice(1:10) %>% plot(add = TRUE, col = 'grey')
title("the ten counties with smallest area")
nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25))
nc %>% group_by(area_cl) %>% class()
nc2 <- nc %>% mutate(area10 = AREA/10)
nc %>% transmute(AREA = AREA/10, geometry = geometry) %>% class()
nc %>% transmute(AREA = AREA/10) %>% class()
nc %>% select(SID74, SID79) %>% names()
nc %>% select(SID74, SID79, geometry) %>% names()
nc %>% select(SID74, SID79) %>% class()
nc %>% select(SID74, SID79, geometry) %>% class()
nc2 <- nc %>% rename(area = AREA)
nc %>% slice(1:2)
nc$area_cl = cut(nc$AREA, c(0, .1, .12, .15, .25))
nc.g <- nc %>% group_by(area_cl)
nc.g %>% summarise(mean(AREA))
nc.g %>% summarise(mean(AREA)) %>% plot(col = grey(3:6 / 7))
nc %>% as.data.frame %>% summarise(mean(AREA))
nc[c(1:100, 1:10), ] %>% distinct() %>% nrow()
library(tidyr)
nc %>% select(SID74, SID79) %>% gather("VAR", "SID", -geometry) %>% summary()
library(tidyr)
nc$row = 1:100 # needed for spread to work
nc %>% select(SID74, SID79, geometry, row) %>%
	gather("VAR", "SID", -geometry, -row) %>%
	spread(VAR, SID) %>% head()
storms.sf = st_as_sf(storms, coords = c("long", "lat"), crs = 4326)
x <- storms.sf %>% group_by(name, year) %>% nest
trs = lapply(x$data, function(tr) st_cast(st_combine(tr), "LINESTRING")[[1]]) %>% st_sfc(crs = 4326)
trs.sf = st_sf(x[,1:2], trs)
plot(trs.sf["year"], axes = TRUE)

sf documentation built on July 24, 2019, 5:05 p.m.