sfinx: Straightforward Filtering Index for AP-MS Data Analysis (SFINX)

The straightforward filtering index (SFINX) identifies true positive protein interactions in a fast, user-friendly, and highly accurate way. It is not only useful for the filtering of affinity purification - mass spectrometry (AP-MS) data, but also for similar types of data resulting from other co-complex interactomics technologies, such as TAP-MS, Virotrap and BioID. SFINX can also be used via the website interface at <http://sfinx.ugent.be>.

Author
Kevin Titeca [aut, cre], Jan Tavernier [ths], Sven Eyckerman [ths]
Date of publication
2016-06-13 17:10:32
Maintainer
Kevin Titeca <sfinxinteractomics@gmail.com>
License
Apache License 2.0
Version
1.7.0
URLs

View on CRAN

Man pages

BaitIdentityExampleFile
A vector with proteins of interest (baits) for the TIP49...
DataInputExampleFile
The TIP49 dataset of protein interactions (AP-MS).
sfinx
SFINX (Straightforward Filtering INdeX).

Files in this package

sfinx
sfinx/inst
sfinx/inst/CITATION
sfinx/inst/doc
sfinx/inst/doc/sfinx-vignette.html
sfinx/inst/doc/sfinx-vignette.Rmd
sfinx/inst/doc/sfinx-vignette.R
sfinx/tests
sfinx/tests/testthat.R
sfinx/tests/testthat
sfinx/tests/testthat/testsfinx.R
sfinx/NAMESPACE
sfinx/data
sfinx/data/BaitIdentityExampleFile.rda
sfinx/data/DataInputExampleFile.rda
sfinx/R
sfinx/R/sfinxMain.R
sfinx/R/zzz.R
sfinx/vignettes
sfinx/vignettes/sfinx-vignette.Rmd
sfinx/vignettes/man
sfinx/vignettes/man/sfinx.Rd
sfinx/vignettes/man/DataInputExampleFile.Rd
sfinx/vignettes/man/BaitIdentityExampleFile.Rd
sfinx/README.md
sfinx/MD5
sfinx/build
sfinx/build/vignette.rds
sfinx/DESCRIPTION
sfinx/man
sfinx/man/sfinx.Rd
sfinx/man/DataInputExampleFile.Rd
sfinx/man/BaitIdentityExampleFile.Rd