Nothing
setup_test_workflow <- function(
metadata,
is_aggregated = TRUE,
time_freq = NULL,
link_geo = NULL,
link = TRUE,
constructor = mrp_workflow
) {
data <- example_sample_data(
is_timevar = metadata$is_timevar,
is_aggregated = is_aggregated,
special_case = metadata$special_case,
family = metadata$family
)
workflow <- constructor()
capture.output({
workflow$preprocess(
data,
is_timevar = metadata$is_timevar,
is_aggregated = is_aggregated,
special_case = metadata$special_case,
family = metadata$family,
time_freq = time_freq
)
if (link) {
workflow$link_acs(link_geo = link_geo)
}
}, type = "message")
return(workflow)
}
setup_test_model <- function(workflow, model_spec = NULL, fit_model = TRUE) {
model_spec <- model_spec %||% list(
intercept = list(
intercept = "normal(0, 1)"
),
fixed = list(
sex = "normal(0, 1)"
)
)
model <- workflow$create_model(
intercept_prior = model_spec$intercept$intercept,
fixed = model_spec$fixed,
varying = model_spec$varying,
interaction = model_spec$interaction
)
if (fit_model) {
model$fit(
n_iter = 100,
n_chains = 1,
show_messages = FALSE,
show_exceptions = FALSE,
diagnostics = NULL
)
}
return(model)
}
expect_save_file <- function(func, ext, ...) {
temp_file <- tempfile(fileext = ext)
func(temp_file, ...)
expect_true(file.exists(temp_file))
unlink(temp_file)
}
read_saved_csv <- function(file_path) {
suppressWarnings(
readr::read_csv(
file_path,
col_types = readr::cols(
zip = readr::col_character(),
county = readr::col_character(),
state = readr::col_character(),
date = readr::col_character(),
.default = readr::col_guess()
),
show_col_types = FALSE
)
)
}
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