| Adj.Rand | Adjusted Rand index |
| Aggregate1 | Aggregates by one vector and uses it for row names |
| Alldups | Finds all duplicates |
| atmospheres | atmospheres |
| Bclabels | Plot bootstrap values |
| Bclust | Bootstrapped hclust |
| BestOverlap | Calculates the best overlap |
| Biarrows | Adds correlation arrows to the scatterplot |
| Biokey | Convert diagnostic keys and classification lists |
| BootA | Bootstrap clustering |
| BootKNN | Bootstrap with kNN |
| BootRF | Bootstrap with 'randomForest()' |
| Boxplots | Grouped boxplots |
| Cdate | System date, time plus easy save history |
| chaetocnema | Chaetocnema flea beetles |
| Cladd | Adds confidence bands to the simple linear model plots |
| classifs | Classification lists |
| Classproj | Class projection |
| Class.sample | Samples along the class labels |
| Clustergram | Clustergram: visualize the cluster structure |
| Coeff.det | Average coefficients of determination for each variable |
| Coml | Compare checklists |
| Cor | Correlation matrix with p-values |
| Cor.vec | Calculates correlation and converts results into the named... |
| CVs | Coefficients of variation |
| Ditto | Removes duplicated data values downstream |
| DNN | Distance matrix based kNN classification |
| dolbli | dolbli |
| Dotcharts | Improved dotcharts |
| drosera | drosera |
| Ell | Plot ellipse |
| Ellipses | Confidence ellipses |
| eq | eq |
| Ex.boxplot | Boxplot explanation |
| Ex.col | Examples of colors |
| Ex.font | Examples of fonts |
| Ex.lty | Examples of line types |
| Ex.margins | Example of plot margins |
| Ex.pch | Point examples |
| Ex.plots | Examples of plot types |
| Fence | Colorize tips of 'hclust' plot |
| Files | Textual file system browser |
| Fill | Fill data values downstream, like in spreadsheets |
| Gap.code | Gap coding |
| Gen.cl.data | Generates datasets for clustering |
| Gini | Compute the simple Gini coefficient |
| Gower.dist | Gower distance |
| Gradd | Classification grid and decision boundaries |
| Gridmoon | Draw with 'R' |
| haltica | Haltica flea beetles |
| Hcl2mat | Clustering to matrix |
| Hclust.match | Counts matches between two hierarchical clusterings |
| Hcoords | Calculates coordinates of nodes from 'hclust' plot |
| Histr | Histogram with overlaid curve |
| hrahn | Angiosperm families: morphological characters |
| Hulls | Convex hulls for multiple groups |
| hwc | hwc |
| Infill | Rarefaction curves |
| Jclust | Simple bootstrap and jackknife clustering |
| K | Coefficient of divergence |
| keys | Diagnostic keys |
| Life | Game of Life |
| Linechart | Dotchart-like plot sfor every scaled variable grouped by... |
| Ls | Ls |
| Mag | Interpreter for effect sizes |
| MDSv | MDS: dimension importance ("explained variance" surrogate) |
| Miney | Miney game |
| Minus.names | Minus names |
| Misclass | Misclassification (confusion) table |
| Missing.map | Textual plot of missing data |
| moldino | moldino |
| MrBayes | Calls MrBayes |
| MRH | Matrix Representation of Hierarchical Clustering |
| NC.dist | Normalized Compression Distance |
| Normality | Check normality |
| Overlap | Calculates overlap between polygons |
| pairwise.Eff | Pairwise table of effects with magnitudes |
| pairwise.Rro.test | Robust rank order test post hoc derivative |
| pairwise.Table2.test | Pairwise Chi-squared or Fisher test for 2-dimensional tables |
| Phyllotaxis | Plant phyllotaxis |
| Pinhull | Point in hull |
| plantago | plantago |
| Pleiad | Correlation circles (correlation pleiads) |
| PlotBest.dist | Dotchart which reflects the "best" base distance method |
| PlotBest.hclust | Plots dotchart with best clustering method |
| PlotBest.mdist | Dotchart which reflects the "best" of non-base distances |
| Ploth | Changes the appearance of cluster dendrogram |
| Plot.phylocl | Plot phylogenetic tree with clades collapsed |
| Points | Number of cases in each location reflected in the point size |
| Polyarea | Area of the polygon |
| Polycenter | Center of the polygon |
| Pull | Select rows from data frame |
| Read.fasta | Read 'FASTA' files |
| Read.tri.nts | Read 'NTSYSpc' files |
| Recode | Basic multiple recoding |
| R.logo | Imitation (!) of the modern 'R' logo |
| Root1 | Roots phylogenetic trees even if outgroup is not monophyletic |
| Rostova.tbl | Calculates multiple correlation matrices (via 'factor1') and... |
| Rpart2newick | Converts 'rpart' object into Newick tree |
| Rresults | Rresults shell script |
| Rro.test | Robust rank order test |
| salix | salix_leaves |
| Saynodynamite | Say "no" to dynamite plots! |
| SM.dist | Simple Match distance |
| Squares | Areas of polygons |
| Str | 'str()' enchanced for data frames |
| S.value | S-value |
| Table2df | Convert table to data frame saving structure |
| Tcoords | Calculates coordinates of tips from 'hclust' plot |
| Tctext | Easy way to add text labels to 'hclust' plot |
| Tobin | Binarize (make dummy variables) |
| Toclip | Insert content to Linux X11 clipboard |
| Topm | Stacks correlation matrix |
| Ttcols | Text-to-columns |
| Updist | Educated distances for semi-supervised clustering |
| Vicinities | Arrange observations by the distance from center |
| VTcoeffs | Effect sizes of association between categorical variables |
| Write.fasta | Write 'FASTA' files |
| Xpager | Separate terminal pager for Linux |
