Files in simDNAmixtures

Simulate Forensic DNA Mixtures

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/write_knowns_as_reference_db.R R/validate_drop_model_settings.R R/write_knowns.R R/sample_LSAE.R R/read_stutter_exceptions.R R/AMEL.R R/sample_gamma_model.R R/sample_many_founders.R R/get_reference_database_from_table.R R/utilities.R R/read_wide_table.R R/wide_references_to_allele_tables.R R/log_normal_model.R R/many_genotypes_int_to_labels.R R/kits.R R/sample_pedigree_genotypes.R R/sample_offspring.R R/sample_mixtures_fixed_parameters.R R/read_stutter_regression.R R/sample_many_pedigree_genotypes.R R/sample_contributor_genotypes.R R/SMASH_to_wide_table.R R/get_allele_columns.R R/sample_log_normal_parameters.R R/sample_log_normal_stutter_variance.R R/gamma_model.R R/get_smash_from_samples.R R/sample_mixture_from_genotypes.R R/aaa_internal_data_validation.R R/read_allele_freqs.R R/read_STRmix_kit_settings.R R/get_deg_starts_at.R R/write_details.R R/get_bare_mixture.R R/read_STRmix_kit_stutters.R R/allele_specific_stutter_model.R R/global_stutter_model.R R/sample_log_normal_model.R R/sample_mixtures_from_genotypes.R R/get_parameter_summary.R R/gf_configuration.R R/stutter_type.R R/YSTR_allele_tables_to_wide_references.R R/sample_genotype.R R/validate_log_normal_settings.R R/allele_tables_to_wide_references.R R/drop_model.R R/read_size_regression.R R/wide_YSTR_references_to_allele_tables.R R/sample_drop_model.R R/sample_mixtures.R

inst/doc/simulating_YSTR_profiles.html

inst/doc/getting_started.html

inst/doc/getting_started.Rmd inst/doc/simulating_YSTR_profiles.R inst/doc/simulating_YSTR_profiles.Rmd inst/doc/getting_started.R

inst/extdata/FBI_extended_Cauc_022024.csv

inst/extdata/YFiler_Plus_F0RP2_Stutter_regression.csv

inst/extdata/YFiler_Plus_F0RP3_Stutter_regression.csv

inst/extdata/YFiler_Plus_F1R_Stutter_regression.csv

inst/extdata/Kintelligence_Linkage_Map.csv

inst/extdata/YFiler_Plus_B1RP1_Stutter_regression.csv

inst/extdata/YFiler_Plus_F2R_Stutter_regression.csv

inst/extdata/Example_2p_Parameter_Summary.csv

inst/extdata/YFiler_Plus_B1R_Stutter_regression.csv

inst/extdata/Kintelligence_1000G_EAS.csv

inst/extdata/YFiler_Plus_F1RP2_Stutter_regression.csv

inst/extdata/GlobalFiler_Double_Back_Stutter_3500.txt

inst/extdata/GlobalFiler_SizeRegression.csv

inst/extdata/YFiler_Plus_B3R_Stutter_regression.csv

inst/extdata/South_Australia_YSTRs.xlsx

inst/extdata/YFiler_Plus_B2RP1_Stutter_regression.csv

inst/extdata/GlobalFiler_Stutter_Exceptions_3500.csv

inst/extdata/YFiler_Plus_SizeRegression.csv

inst/extdata/YFiler_Plus_B2R_Stutter_regression.csv

inst/extdata/Kintelligence_1000G_AMR.csv

inst/extdata/YFiler_Plus_B2RP3_Stutter_regression.csv

inst/extdata/GlobalFiler_Forward_Stutter_3500.txt

inst/extdata/YFiler_Plus_B1RP3_Stutter_regression.csv

inst/extdata/Example_References_DB.csv

inst/extdata/Kintelligence_1000G_AFR.csv

inst/extdata/GlobalFiler_2bp_Stutter_3500.txt

inst/extdata/YFiler_Plus_B2RP4_Stutter_regression.csv

inst/extdata/YFiler_Plus_B1RP2_Stutter_regression.csv

inst/extdata/GlobalFiler_Stutter_3500.txt

inst/extdata/YFiler_Plus_3500_FSSA.xml

inst/extdata/Kintelligence_1000G_EUR.csv

inst/extdata/YFiler_Plus_B2RP2_Stutter_regression.csv

inst/extdata/Kintelligence_1000G_SAS.csv

build/vignette.rds

build/partial.rdb

tests/testthat.R tests/testthat/test_wide_YSTR_references_to_allele_tables_and_back.R tests/testthat/test_log_normal_sampling.R tests/testthat/test_size_regression.R tests/testthat/test_get_allele_columns.R tests/testthat/test_sample_many_pedigree_genotypes.R tests/testthat/test_log_normal_construction.R tests/testthat/test_sample_mixtures.R tests/testthat/test_sample_many_founders.R tests/testthat/test_wide_references_to_allele_tables_and_back.R tests/testthat/test_drop_model.R tests/testthat/test_sample_contributor_genotypes.R vignettes/getting_started.Rmd

vignettes/refs.bib

vignettes/simulating_YSTR_profiles.Rmd

data/kits.rda

man/sample_log_normal_parameters.Rd man/read_wide_table.Rd man/sample_many_pedigree_genotypes.Rd man/sample_offspring.Rd man/read_STRmix_kit_settings.Rd man/gamma_model.Rd man/sample_mixtures_from_genotypes.Rd man/sample_mixtures_fixed_parameters.Rd man/sample_mixtures.Rd man/sample_log_normal_stutter_variance.Rd man/SMASH_to_wide_table.Rd man/sample_log_normal_model.Rd man/dot-validate_freqs.Rd man/dot-validate_pedigree.Rd man/log_normal_model.Rd man/drop_model.Rd man/sample_mixture_from_genotypes.Rd man/read_size_regression.Rd man/sample_gamma_model.Rd man/sample_LSAE.Rd man/sample_contributor_genotypes.Rd man/gf_configuration.Rd man/read_stutter_regression.Rd man/read_stutter_exceptions.Rd man/sample_pedigree_genotypes.Rd man/stutter_type.Rd man/sample_drop_model.Rd man/global_stutter_model.Rd man/read_allele_freqs.Rd man/kits.Rd man/allele_specific_stutter_model.Rd man/sample_genotype.Rd

man/figures/README-example-1.png

man/figures/README-pressure-1.png

man/figures/README-plot_ped-1.png

man/figures/README-unnamed-chunk-4-1.png

man/figures/README-unnamed-chunk-5-1.png

simDNAmixtures documentation built on April 15, 2025, 1:11 a.m.