simPH: Tools for Simulating and Plotting Quantities of Interest Estimated from Cox Proportional Hazards Models

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Simulates and plots quantities of interest (relative hazards, first differences, and hazard ratios) for linear coefficients, multiplicative interactions, polynomials, penalised splines, and non-proportional hazards, as well as stratified survival curves from Cox Proportional Hazard models. It also simulates and plots marginal effects for multiplicative interactions.

Author
Christopher Gandrud [aut, cre]
Date of publication
2016-12-05 18:28:48
Maintainer
Christopher Gandrud <christopher.gandrud@gmail.com>
License
GPL-3
Version
1.3.9
URLs

View on CRAN

Man pages

as.data.frame.coxsim
Convert a coxsim class object into a data frame
CarpenterFdaData
A data set from Carpenter (2002).
coxsimInteract
Simulate quantities of interest for linear multiplicative...
coxsimLinear
Simulate quantities of interest for covariates from Cox...
coxsimPoly
Simulate quantities of interest for a range of values for a...
coxsimSpline
Simulate quantities of interest for penalized splines from...
coxsimtvc
Simulate time-interactive quantities of interest from Cox...
ggfitStrata
Graph fitted stratified survival curves from Cox Proportional...
GolubEUPData
A data set from Golub & Steunenberg (2007)
MinMaxLines
Transform the simulation object to include only the min and...
setXl
Create a sequence of Xl values
simGG
A method for plotting simulation objects created by simPH
simGG.siminteract
Plot simulated linear multiplicative interactions from Cox...
simGG.simlinear
Plot simulated linear, non-time interacted quantities of...
simGG.simpoly
Plot simulated polynomial quantities of interest from Cox...
simGG.simspline
Plot simulated penalised spline hazards from Cox Proportional...
simGG.simtvc
Plot simulated time-interactive hazard ratios or stratified...
simPH
An R package for simulating and plotting quantities of...
SurvExpand
Convert a data frame of non-equal interval continuous...
tvc
Create a time interaction variable

Files in this package

simPH
simPH/inst
simPH/inst/CITATION
simPH/inst/doc
simPH/inst/doc/simPH-overview.Rnw
simPH/inst/doc/simPH-overview.R
simPH/inst/doc/simPH-overview.pdf
simPH/NAMESPACE
simPH/demo
simPH/demo/tvc-jss.R
simPH/demo/linear-jss.R
simPH/demo/00Index
simPH/demo/splines-jss.R
simPH/NEWS
simPH/data
simPH/data/GolubEUPData.tab.xz
simPH/data/CarpenterFdaData.tab.xz
simPH/R
simPH/R/coxsimPoly.R
simPH/R/ggfitStrata.R
simPH/R/GolubEUPData.R
simPH/R/IntervalConstrict.R
simPH/R/coxsimLinear.R
simPH/R/simGG.simspline.R
simPH/R/CarpenterFdaData.R
simPH/R/simGG.simpoly.R
simPH/R/coxsimSpline.R
simPH/R/SurvExpand.R
simPH/R/smallUtils.R
simPH/R/SPInBounds.R
simPH/R/simPH.R
simPH/R/simGG.simtvc.R
simPH/R/SmoothSim.R
simPH/R/coxsimtvc.R
simPH/R/coxsimInteract.R
simPH/R/MinMaxLines.R
simPH/R/simGG.simlinear.R
simPH/R/simGG.siminteract.R
simPH/R/simGG.R
simPH/vignettes
simPH/vignettes/simPH-overview.Rnw
simPH/vignettes/HRBibliography.bib
simPH/vignettes/HRPackages.bib
simPH/README.md
simPH/MD5
simPH/build
simPH/build/vignette.rds
simPH/DESCRIPTION
simPH/man
simPH/man/simGG.simspline.Rd
simPH/man/coxsimtvc.Rd
simPH/man/coxsimPoly.Rd
simPH/man/simGG.Rd
simPH/man/simPH.Rd
simPH/man/simGG.simlinear.Rd
simPH/man/coxsimInteract.Rd
simPH/man/as.data.frame.coxsim.Rd
simPH/man/SurvExpand.Rd
simPH/man/coxsimSpline.Rd
simPH/man/ggfitStrata.Rd
simPH/man/tvc.Rd
simPH/man/CarpenterFdaData.Rd
simPH/man/setXl.Rd
simPH/man/MinMaxLines.Rd
simPH/man/simGG.siminteract.Rd
simPH/man/coxsimLinear.Rd
simPH/man/GolubEUPData.Rd
simPH/man/simGG.simpoly.Rd
simPH/man/simGG.simtvc.Rd