simmr: A Stable Isotope Mixing Model

Fits a stable isotope mixing model via JAGS in R. The package allows for any number of isotopes or sources, as well as concentration dependencies.

Author
Andrew Parnell
Date of publication
2016-01-19 11:57:28
Maintainer
Andrew Parnell <andrew.parnell@ucd.ie>
License
GPL (>= 2)
Version
0.3

View on CRAN

Man pages

combine_sources
Combine the dietary proportions from two food sources after...
compare_groups
Compare dietary proportions for a single source across...
compare_sources
Compare dietary proportions between multiple sources
plot.simmr_input
Plot the 'simmr_input' data created from 'simmr_load'
plot.simmr_output
Plot different features of an object created from...
simmr_elicit
Function to allow informative prior distribution to be...
simmr_load
Function to load in simmr data and check for errors
simmr_mcmc
Run a 'simmr_input' object through the main simmr Markov...
simmr-package
\Sexpr[results=rd,stage=build]{tools:::Rd_package_title("simmr")}
summary.simmr_output
Summarises the output created with 'simmr_mcmc'

Files in this package

simmr
simmr/inst
simmr/inst/doc
simmr/inst/doc/simmr.html
simmr/inst/doc/simmr.R
simmr/inst/doc/simmr.Rmd
simmr/NAMESPACE
simmr/R
simmr/R/plot.simmr_output.R
simmr/R/simmr_mcmc.R
simmr/R/summary.simmr_output.R
simmr/R/compare_groups.R
simmr/R/simmr_load.R
simmr/R/plot.simmr_input.R
simmr/R/simmr_elicit.R
simmr/R/print.simmr_output.R
simmr/R/print.simmr_input.R
simmr/R/combine_sources.R
simmr/R/compare_sources.R
simmr/vignettes
simmr/vignettes/simmr.Rmd
simmr/README.md
simmr/MD5
simmr/build
simmr/build/vignette.rds
simmr/build/partial.rdb
simmr/DESCRIPTION
simmr/man
simmr/man/simmr_mcmc.Rd
simmr/man/simmr_elicit.Rd
simmr/man/compare_sources.Rd
simmr/man/simmr-package.Rd
simmr/man/simmr_load.Rd
simmr/man/combine_sources.Rd
simmr/man/compare_groups.Rd
simmr/man/plot.simmr_output.Rd
simmr/man/plot.simmr_input.Rd
simmr/man/summary.simmr_output.Rd