Nothing
tests/testthat/_snaps/sim_outbreak.md
In simulist: Simulate Disease Outbreak Line List and Contacts Data
sim_outbreak works as expected with defaults
Code
sim_outbreak()
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Lolette Phillips suspected f 59 2023-01-01 2023-01-01
2 2 James Jack suspected m 90 2023-01-01 2023-01-01
3 3 Chen Kantha confirmed m 4 2023-01-02 2023-01-02
4 5 Saleema al-Zaki probable f 29 2023-01-04 2023-01-04
5 6 David Ponzio confirmed m 14 2023-01-05 2023-01-05
6 7 Christopher Ward probable m 85 2023-01-06 2023-01-06
7 10 Laura Ilaoa confirmed f 25 2023-01-13 2023-01-13
8 11 Morgan Mason suspected f 34 2023-01-11 2023-01-11
9 12 Cornelius Turner confirmed m 89 2023-01-13 2023-01-13
10 14 Shaddaad el-Younes suspected m 63 2023-01-11 2023-01-11
11 18 Carlo Ceazar Corpuz confirmed m 74 2023-01-14 2023-01-14
12 19 Bishr al-Qasim confirmed m 34 2023-01-12 2023-01-12
13 22 Nichole Mcfarland confirmed f 29 2023-01-12 2023-01-12
14 24 Jubair el-Aly confirmed m 46 2023-01-13 2023-01-13
15 27 Hafsa al-Massoud probable f 24 2023-01-14 2023-01-14
16 29 Trever Manis confirmed m 41 2023-01-21 2023-01-21
17 30 Maiya Vathanavarin suspected f 72 2023-01-19 2023-01-19
18 31 Ghaamid el-Zafar probable m 6 2023-01-20 2023-01-20
19 33 Kelly Runningbear-Paul confirmed f 61 2023-01-14 2023-01-14
20 34 James Welter probable m 44 2023-01-14 2023-01-14
21 35 Austin Manheimer confirmed m 71 2023-01-27 2023-01-27
22 38 Orville Stadelbauer confirmed m 69 2023-01-23 2023-01-23
23 39 Jennifer Ouk probable f 61 2023-01-23 2023-01-23
24 41 Nafeesa al-Zaher confirmed f 64 2023-01-24 2023-01-24
25 44 Nawwaara el-Pasha probable f 61 2023-01-22 2023-01-22
26 45 Saleet el-Mohammed probable m 66 2023-01-22 2023-01-22
27 47 Christian Mendoza probable m 81 2023-01-28 2023-01-28
28 50 Eraina Mcgee confirmed f 53 2023-01-28 2023-01-28
29 51 Mia Floyd probable f 45 2023-01-29 2023-01-29
30 53 Collin Chavez confirmed m 42 2023-02-02 2023-02-02
31 54 Itzel Gonzales confirmed f 78 2023-02-03 2023-02-03
32 55 Alexis Caramillo confirmed f 35 2023-01-24 2023-01-24
33 56 Ronnie Scurlock suspected m 54 2023-01-26 2023-01-26
34 58 Shane Ahmad confirmed m 68 2023-01-25 2023-01-25
35 59 Ghaaliya al-Shaheed probable f 3 2023-01-23 2023-01-23
36 60 Exzinia Smith probable f 44 2023-01-29 2023-01-29
37 63 Rhiannon Freeland probable f 62 2023-01-31 2023-01-31
38 64 Deisha Beckner confirmed f 35 2023-01-29 2023-01-29
39 65 Nelly Reyez confirmed f 90 2023-02-03 2023-02-03
40 66 Nadheera el-Mohiuddin probable f 25 2023-02-01 2023-02-01
41 71 Caroline Vargas Pena probable f 46 2023-01-29 2023-01-29
42 73 Mathurin Curtis confirmed m 8 2023-02-01 2023-02-01
43 77 Kevin Shahi confirmed m 63 2023-01-30 2023-01-30
44 78 Diksha Reichal suspected f 54 2023-01-29 2023-01-29
45 80 Jazmine Sturgeon probable f 67 2023-02-03 2023-02-03
46 85 Sally Richardson probable f 37 2023-02-02 2023-02-02
47 88 Laraena Batson confirmed f 73 2023-01-30 2023-01-30
48 89 Monica Ye probable f 13 2023-02-02 2023-02-02
49 90 Kashauna Yorks probable f 72 2023-02-01 2023-02-01
50 93 Carmelita Montoya probable f 61 2023-02-04 2023-02-04
51 97 Aliyya el-Yassin probable f 22 2023-02-05 2023-02-05
52 98 Alicia Vue confirmed f 29 2023-02-04 2023-02-04
53 101 Rashele Williams confirmed f 17 2023-02-07 2023-02-07
54 108 Isabella Medina probable f 71 2023-02-14 2023-02-14
55 111 Samuel Goodfellow confirmed m 90 2023-02-09 2023-02-09
56 113 Bertha Mohar probable f 23 2023-02-12 2023-02-12
57 114 Mu,Aawiya al-Kaba confirmed m 35 2023-02-16 2023-02-16
58 116 Andrew Garcia confirmed m 62 2023-02-24 2023-02-24
59 119 Trevor Colligan confirmed m 57 2023-02-23 2023-02-23
60 120 Taaj el-Sarah suspected m 44 2023-02-18 2023-02-18
61 122 Savannah Cohen confirmed f 57 2023-03-02 2023-03-02
62 123 Nawfa el-Anwar suspected f 63 2023-03-08 2023-03-08
63 125 Ryan Zheng suspected m 46 2023-02-28 2023-02-28
64 126 Henry Reichman suspected m 66 2023-02-26 2023-02-26
65 130 Shannon Armbrust probable f 68 2023-03-07 2023-03-07
66 131 Orilea Diego probable f 12 2023-03-09 2023-03-09
67 133 Kloe Avila confirmed f 51 2023-03-18 2023-03-18
68 138 Sarah Griffith confirmed f 2 2023-03-10 2023-03-10
69 139 Kara Finken probable f 53 2023-03-09 2023-03-09
70 142 Raul Aguirre Molina probable m 76 2023-03-23 2023-03-23
71 143 Mikayla Smith confirmed f 82 2023-03-21 2023-03-21
72 145 Mansoor al-Siddique confirmed m 25 2023-03-15 2023-03-15
73 146 Nizaam al-Salame suspected m 76 2023-03-13 2023-03-13
74 147 Alexis Harding confirmed f 14 2023-03-13 2023-03-13
75 150 Unique Vigil confirmed f 76 2023-03-11 2023-03-11
76 153 Tanya Mcadoo confirmed f 78 2023-03-15 2023-03-15
77 154 Shawn Morgan confirmed m 75 2023-03-24 2023-03-24
78 155 Asysa Robinson confirmed f 76 2023-03-24 2023-03-24
79 157 Sakeena al-Abdoo suspected f 80 2023-03-18 2023-03-18
80 158 Richard Prum confirmed m 41 2023-03-18 2023-03-18
81 159 Shahla al-Jaffer confirmed f 78 2023-03-19 2023-03-19
82 163 Kailey Braden suspected f 28 2023-03-15 2023-03-15
83 164 Raadiya el-Chahine confirmed f 2 2023-03-21 2023-03-21
84 166 Janie Santa Cruz probable f 82 2023-03-26 2023-03-26
85 171 Alvaro Romero probable m 5 2023-03-22 2023-03-22
86 172 Lane Rodriguez confirmed m 1 2023-03-20 2023-03-20
87 173 Ka Lee confirmed m 44 2023-03-19 2023-03-19
88 174 Qaaid al-Shaker suspected m 76 2023-03-16 2023-03-16
89 175 Munsif al-Ozer suspected m 3 2023-03-29 2023-03-29
90 176 Sharon Watson probable f 15 2023-03-25 2023-03-25
91 177 Danielle Ouellette confirmed f 19 2023-03-26 2023-03-26
92 178 Abdur Rasheed al-Salahuddin confirmed m 76 2023-03-25 2023-03-25
93 182 Samuel Videtzky confirmed m 90 2023-03-27 2023-03-27
94 186 Shalise Peters-Maloy confirmed f 64 2023-04-03 2023-04-03
95 189 Jay Herman confirmed m 35 2023-03-29 2023-03-29
96 195 Manaara el-Saba confirmed f 84 2023-03-27 2023-03-27
97 196 Amelia Gallegos confirmed f 18 2023-03-30 2023-03-30
98 197 Brieannah Coles suspected f 79 2023-03-28 2023-03-28
99 199 Sarah Vu suspected f 49 2023-04-07 2023-04-07
100 200 Mason Powells probable m 56 2023-04-05 2023-04-05
101 201 Ashley Dotson confirmed f 76 2023-04-07 2023-04-07
102 202 Abdul Ghafoor al-Firman confirmed m 41 2023-04-03 2023-04-03
103 205 Vincent Arnick suspected m 29 2023-04-01 2023-04-01
104 209 Razeen al-Sala suspected m 39 2023-04-05 2023-04-05
105 210 Rusty Figueroa confirmed m 32 2023-04-01 2023-04-01
106 211 Emma Jones suspected f 9 2023-04-06 2023-04-06
107 213 Cam Tu Quilon confirmed f 39 2023-04-11 2023-04-11
108 214 Fisayo Wallace confirmed m 12 2023-04-17 2023-04-17
109 219 Alejandra Purdham confirmed f 52 2023-04-10 2023-04-10
110 221 Yahya el-Aslam confirmed m 22 2023-04-02 2023-04-02
111 224 Nabeel el-Karam probable m 68 2023-04-08 2023-04-08
112 226 Sandra Rodriquez confirmed f 57 2023-04-06 2023-04-06
113 229 Ameen al-Shakir confirmed m 8 2023-04-12 2023-04-12
114 230 Azmi el-Safar confirmed m 28 2023-04-12 2023-04-12
115 232 Laaiqa el-Azizi suspected f 2 2023-04-02 2023-04-02
116 233 Jose Lopez confirmed m 84 2023-04-09 2023-04-09
117 234 Mreenal Solberg confirmed f 52 2023-04-09 2023-04-09
118 235 Kevin Behr confirmed m 58 2023-04-12 2023-04-12
119 236 Khyleah Jones suspected f 29 2023-04-10 2023-04-10
120 238 Quinn Barrett confirmed m 30 2023-04-14 2023-04-14
121 240 Bryanna Medrano confirmed f 71 2023-04-15 2023-04-15
122 243 Marques Rice suspected m 43 2023-04-13 2023-04-13
123 245 Andrew Zaragoza-Madrid confirmed m 40 2023-04-15 2023-04-15
124 250 Julanne El-Amin suspected f 46 2023-04-16 2023-04-16
125 251 Jason Sowards suspected m 69 2023-04-11 2023-04-11
126 252 Yeeleng Tran suspected m 69 2023-04-20 2023-04-20
127 253 Isaac Reid probable m 38 2023-04-20 2023-04-20
128 254 Lawrence Williams probable m 28 2023-04-16 2023-04-16
129 255 Adrian Anaya confirmed m 82 2023-04-16 2023-04-16
130 258 Colette Torres confirmed f 19 2023-04-14 2023-04-14
131 261 Jose Luna confirmed m 46 2023-04-26 2023-04-26
132 262 Ummu Kulthoom al-Ghaffari confirmed f 71 2023-04-13 2023-04-13
133 264 Luna Vigil confirmed f 4 2023-04-25 2023-04-25
134 265 Jasmine Evans confirmed f 31 2023-04-25 2023-04-25
135 267 Javon Jenkins probable m 16 2023-04-20 2023-04-20
136 268 Clifton Charron confirmed m 53 2023-04-21 2023-04-21
137 277 Zachary Stuart confirmed m 14 2023-05-01 2023-05-01
138 278 Naseer el-Javed confirmed m 48 2023-04-28 2023-04-28
139 279 Alexis Stafford confirmed f 89 2023-04-25 2023-04-25
140 280 Razeen el-Azad suspected m 39 2023-04-26 2023-04-26
141 282 Jordan Marshall probable f 20 2023-04-21 2023-04-21
142 284 Marcus Erman probable m 6 2023-05-03 2023-05-03
143 285 Ismad al-Badour probable m 28 2023-05-05 2023-05-05
144 291 Firdaus el-Farha suspected f 42 2023-05-01 2023-05-01
145 292 Jane David confirmed f 71 2023-04-23 2023-04-23
146 293 Corina Morales probable f 9 2023-05-05 2023-05-05
147 296 Justin Delori suspected m 61 2023-05-06 2023-05-06
148 298 Janalen Nguyen confirmed f 53 2023-05-02 2023-05-02
149 301 Naseera al-Arif confirmed f 76 2023-04-23 2023-04-23
150 302 Andrew Sun confirmed m 69 2023-04-26 2023-04-26
151 304 Ty Rains confirmed m 50 2023-05-07 2023-05-07
152 307 Javier Valdez probable m 7 2023-05-09 2023-05-09
153 310 Kyana Ludwig confirmed f 45 2023-04-24 2023-04-24
154 311 Jessie Berry confirmed f 83 2023-04-25 2023-04-25
155 313 Jazmyn Guyton confirmed f 41 2023-04-27 2023-04-27
156 316 Gia Garcia confirmed f 88 2023-05-10 2023-05-10
157 320 John Trujillo probable m 79 2023-05-01 2023-05-01
158 326 Haley Hamlin probable f 82 2023-05-08 2023-05-08
date_admission outcome date_outcome date_first_contact date_last_contact
1 2023-01-09 died 2023-01-13 <NA> <NA>
2 <NA> recovered <NA> 2022-12-29 2023-01-03
3 <NA> recovered <NA> 2022-12-28 2023-01-01
4 <NA> recovered <NA> 2022-12-28 2023-01-04
5 2023-01-09 died 2023-01-23 2022-12-31 2023-01-04
6 2023-01-08 recovered <NA> 2022-12-31 2023-01-06
7 <NA> recovered <NA> 2023-01-02 2023-01-07
8 2023-01-24 died 2023-01-27 2023-01-03 2023-01-07
9 <NA> recovered <NA> 2023-01-03 2023-01-11
10 <NA> recovered <NA> 2023-01-04 2023-01-09
11 <NA> recovered <NA> 2023-01-09 2023-01-17
12 <NA> recovered <NA> 2023-01-07 2023-01-14
13 <NA> recovered <NA> 2023-01-07 2023-01-17
14 <NA> recovered <NA> 2023-01-08 2023-01-15
15 2023-01-19 died 2023-01-27 2023-01-09 2023-01-16
16 <NA> recovered <NA> 2023-01-08 2023-01-14
17 <NA> recovered <NA> 2023-01-07 2023-01-13
18 <NA> recovered <NA> 2023-01-10 2023-01-16
19 <NA> recovered <NA> 2023-01-12 2023-01-15
20 2023-02-10 recovered <NA> 2023-01-12 2023-01-18
21 <NA> died 2023-02-05 2023-01-16 2023-01-21
22 <NA> recovered <NA> 2023-01-19 2023-01-23
23 <NA> recovered <NA> 2023-01-18 2023-01-24
24 <NA> recovered <NA> 2023-01-17 2023-01-21
25 <NA> recovered <NA> 2023-01-18 2023-01-21
26 <NA> recovered <NA> 2023-01-19 2023-01-25
27 <NA> recovered <NA> 2023-01-23 2023-01-28
28 2023-01-30 died 2023-02-16 2023-01-20 2023-01-28
29 <NA> recovered <NA> 2023-01-22 2023-01-25
30 2023-02-11 recovered <NA> 2023-01-20 2023-01-27
31 <NA> recovered <NA> 2023-01-23 2023-01-29
32 <NA> recovered <NA> 2023-01-17 2023-01-24
33 <NA> died 2023-02-14 2023-01-21 2023-01-26
34 2023-01-29 recovered <NA> 2023-01-17 2023-01-22
35 <NA> recovered <NA> 2023-01-15 2023-01-22
36 2023-02-02 died 2023-02-09 2023-01-20 2023-01-23
37 <NA> recovered <NA> 2023-01-27 2023-01-31
38 <NA> recovered <NA> 2023-01-26 2023-02-01
39 2023-02-08 died 2023-02-21 2023-01-28 2023-02-02
40 2023-02-05 recovered <NA> 2023-01-27 2023-01-30
41 <NA> recovered <NA> 2023-01-19 2023-01-28
42 <NA> died 2023-02-15 2023-01-25 2023-02-02
43 <NA> recovered <NA> 2023-01-26 2023-02-01
44 <NA> recovered <NA> 2023-01-26 2023-01-30
45 <NA> recovered <NA> 2023-01-31 2023-02-02
46 <NA> recovered <NA> 2023-01-30 2023-02-05
47 <NA> recovered <NA> 2023-01-28 2023-01-30
48 <NA> recovered <NA> 2023-01-24 2023-02-03
49 <NA> recovered <NA> 2023-01-28 2023-02-05
50 <NA> recovered <NA> 2023-02-03 2023-02-05
51 <NA> died 2023-02-14 2023-01-31 2023-02-04
52 <NA> died 2023-02-13 2023-01-27 2023-02-02
53 <NA> recovered <NA> 2023-01-28 2023-02-09
54 <NA> died 2023-02-28 2023-01-31 2023-02-10
55 <NA> recovered <NA> 2023-01-31 2023-02-05
56 <NA> recovered <NA> 2023-02-04 2023-02-08
57 <NA> recovered <NA> 2023-02-10 2023-02-17
58 <NA> recovered <NA> 2023-02-08 2023-02-13
59 <NA> recovered <NA> 2023-02-10 2023-02-12
60 <NA> recovered <NA> 2023-02-10 2023-02-16
61 <NA> recovered <NA> 2023-02-24 2023-03-01
62 2023-03-11 died 2023-03-25 2023-02-21 2023-02-26
63 <NA> recovered <NA> 2023-02-20 2023-02-26
64 <NA> recovered <NA> 2023-02-22 2023-02-26
65 <NA> recovered <NA> 2023-03-01 2023-03-07
66 <NA> recovered <NA> 2023-03-01 2023-03-04
67 <NA> recovered <NA> 2023-02-27 2023-03-13
68 <NA> recovered <NA> 2023-03-09 2023-03-11
69 2023-03-16 died 2023-03-22 2023-03-09 2023-03-13
70 <NA> recovered <NA> 2023-03-15 2023-03-20
71 <NA> recovered <NA> 2023-03-16 2023-03-23
72 <NA> recovered <NA> 2023-03-08 2023-03-15
73 <NA> recovered <NA> 2023-03-07 2023-03-14
74 2023-03-17 recovered <NA> 2023-03-09 2023-03-11
75 <NA> recovered <NA> 2023-03-03 2023-03-13
76 <NA> recovered <NA> 2023-03-11 2023-03-22
77 2023-03-31 recovered <NA> 2023-03-14 2023-03-19
78 <NA> recovered <NA> 2023-03-14 2023-03-16
79 <NA> recovered <NA> 2023-03-09 2023-03-18
80 <NA> recovered <NA> 2023-03-08 2023-03-16
81 <NA> recovered <NA> 2023-03-11 2023-03-18
82 <NA> recovered <NA> 2023-03-10 2023-03-18
83 <NA> recovered <NA> 2023-03-14 2023-03-19
84 <NA> recovered <NA> 2023-03-20 2023-03-26
85 <NA> recovered <NA> 2023-03-15 2023-03-19
86 <NA> recovered <NA> 2023-03-13 2023-03-20
87 2023-03-22 died 2023-04-03 2023-03-14 2023-03-16
88 <NA> recovered <NA> 2023-03-13 2023-03-15
89 <NA> recovered <NA> 2023-03-24 2023-03-28
90 <NA> recovered <NA> 2023-03-20 2023-03-27
91 <NA> recovered <NA> 2023-03-18 2023-03-23
92 <NA> recovered <NA> 2023-03-17 2023-03-23
93 <NA> recovered <NA> 2023-03-12 2023-03-21
94 <NA> died 2023-04-12 2023-03-23 2023-03-28
95 <NA> died 2023-04-20 2023-03-22 2023-03-30
96 <NA> recovered <NA> 2023-03-24 2023-03-27
97 2023-04-03 recovered <NA> 2023-03-22 2023-03-27
98 2023-04-03 recovered <NA> 2023-03-23 2023-04-01
99 <NA> recovered <NA> 2023-04-03 2023-04-06
100 <NA> recovered <NA> 2023-03-31 2023-04-07
101 2023-04-12 recovered <NA> 2023-04-01 2023-04-04
102 <NA> recovered <NA> 2023-03-26 2023-04-02
103 <NA> recovered <NA> 2023-03-24 2023-04-02
104 2023-04-12 recovered <NA> 2023-03-24 2023-04-01
105 <NA> recovered <NA> 2023-03-26 2023-04-03
106 <NA> recovered <NA> 2023-03-29 2023-03-31
107 2023-04-13 died 2023-04-14 2023-04-04 2023-04-10
108 2023-04-20 died 2023-04-28 2023-04-02 2023-04-05
109 <NA> recovered <NA> 2023-03-30 2023-04-07
110 <NA> recovered <NA> 2023-03-31 2023-04-03
111 <NA> died 2023-04-19 2023-04-02 2023-04-08
112 <NA> recovered <NA> 2023-03-31 2023-04-04
113 <NA> recovered <NA> 2023-04-09 2023-04-12
114 <NA> recovered <NA> 2023-04-06 2023-04-11
115 <NA> recovered <NA> 2023-04-01 2023-04-10
116 <NA> recovered <NA> 2023-04-02 2023-04-06
117 2023-04-13 died 2023-04-18 2023-04-03 2023-04-09
118 <NA> recovered <NA> 2023-04-06 2023-04-11
119 <NA> recovered <NA> 2023-04-03 2023-04-11
120 <NA> recovered <NA> 2023-04-09 2023-04-14
121 <NA> recovered <NA> 2023-03-30 2023-04-08
122 <NA> recovered <NA> 2023-04-02 2023-04-15
123 <NA> recovered <NA> 2023-04-08 2023-04-12
124 <NA> recovered <NA> 2023-04-09 2023-04-17
125 <NA> recovered <NA> 2023-04-09 2023-04-11
126 <NA> recovered <NA> 2023-04-08 2023-04-13
127 <NA> recovered <NA> 2023-04-06 2023-04-14
128 <NA> died 2023-04-25 2023-04-11 2023-04-15
129 <NA> recovered <NA> 2023-04-13 2023-04-19
130 <NA> recovered <NA> 2023-04-11 2023-04-20
131 <NA> recovered <NA> 2023-04-13 2023-04-21
132 2023-04-18 died 2023-05-02 2023-04-10 2023-04-20
133 2023-04-27 recovered <NA> 2023-04-14 2023-04-22
134 <NA> recovered <NA> 2023-04-15 2023-04-26
135 2023-04-24 recovered <NA> 2023-04-19 2023-04-27
136 2023-04-29 died 2023-05-05 2023-04-20 2023-04-23
137 <NA> recovered <NA> 2023-04-11 2023-04-14
138 2023-05-01 recovered <NA> 2023-04-23 2023-04-29
139 <NA> recovered <NA> 2023-04-15 2023-04-24
140 <NA> recovered <NA> 2023-04-16 2023-04-24
141 2023-04-26 recovered <NA> 2023-04-16 2023-04-22
142 <NA> recovered <NA> 2023-04-28 2023-05-01
143 <NA> recovered <NA> 2023-04-23 2023-05-01
144 <NA> recovered <NA> 2023-04-19 2023-04-23
145 <NA> recovered <NA> 2023-04-16 2023-04-22
146 <NA> recovered <NA> 2023-04-29 2023-05-09
147 <NA> recovered <NA> 2023-05-03 2023-05-07
148 <NA> recovered <NA> 2023-04-25 2023-05-05
149 <NA> recovered <NA> 2023-04-19 2023-05-02
150 <NA> recovered <NA> 2023-04-18 2023-04-25
151 2023-05-11 recovered <NA> 2023-05-01 2023-05-07
152 <NA> recovered <NA> 2023-04-25 2023-05-06
153 <NA> recovered <NA> 2023-04-19 2023-04-26
154 <NA> recovered <NA> 2023-04-20 2023-04-27
155 <NA> recovered <NA> 2023-04-25 2023-04-30
156 <NA> recovered <NA> 2023-05-05 2023-05-10
157 <NA> recovered <NA> 2023-04-22 2023-04-28
158 2023-05-21 died 2023-05-22 2023-04-27 2023-05-03
ct_value
1 NA
2 NA
3 24.8
4 NA
5 24.6
6 NA
7 26.5
8 NA
9 24.7
10 NA
11 24.5
12 21.7
13 21.5
14 24.2
15 NA
16 23.1
17 NA
18 NA
19 21.5
20 NA
21 21.5
22 26.4
23 NA
24 25.2
25 NA
26 NA
27 NA
28 25.8
29 NA
30 21.7
31 23.7
32 24.8
33 NA
34 23.6
35 NA
36 NA
37 NA
38 25.3
39 23.9
40 NA
41 NA
42 27.8
43 26.1
44 NA
45 NA
46 NA
47 24.3
48 NA
49 NA
50 NA
51 NA
52 25.9
53 24.2
54 NA
55 27.1
56 NA
57 27.1
58 24.3
59 24.5
60 NA
61 30.3
62 NA
63 NA
64 NA
65 NA
66 NA
67 25.2
68 23.0
69 NA
70 NA
71 25.7
72 25.1
73 NA
74 20.0
75 25.7
76 27.2
77 24.2
78 27.5
79 NA
80 25.3
81 27.2
82 NA
83 24.9
84 NA
85 NA
86 25.2
87 24.0
88 NA
89 NA
90 NA
91 26.8
92 24.2
93 29.1
94 24.1
95 23.7
96 23.4
97 25.2
98 NA
99 NA
100 NA
101 26.7
102 27.8
103 NA
104 NA
105 26.4
106 NA
107 20.5
108 26.4
109 28.1
110 25.6
111 NA
112 18.6
113 25.9
114 23.8
115 NA
116 24.9
117 23.2
118 24.0
119 NA
120 25.3
121 22.3
122 NA
123 25.3
124 NA
125 NA
126 NA
127 NA
128 NA
129 23.9
130 25.8
131 22.5
132 27.2
133 25.1
134 18.6
135 NA
136 23.1
137 24.6
138 25.7
139 26.2
140 NA
141 NA
142 NA
143 NA
144 NA
145 28.1
146 NA
147 NA
148 23.7
149 26.7
150 22.0
151 24.2
152 NA
153 23.7
154 25.4
155 22.5
156 29.0
157 NA
158 NA
$contacts
from to age sex
1 Lolette Phillips James Jack 90 m
2 Lolette Phillips Chen Kantha 4 m
3 James Jack Anisa Wilkins 86 f
4 James Jack Saleema al-Zaki 29 f
5 Chen Kantha David Ponzio 14 m
6 Chen Kantha Christopher Ward 85 m
7 Chen Kantha Yutitham Moua 18 m
8 Saleema al-Zaki Crystal Estrada-Chavez 59 f
9 David Ponzio Laura Ilaoa 25 f
10 David Ponzio Morgan Mason 34 f
11 David Ponzio Cornelius Turner 89 m
12 David Ponzio Desmond Angel 5 m
13 Christopher Ward Shaddaad el-Younes 63 m
14 Morgan Mason Jameela al-Arshad 50 f
15 Morgan Mason Junaid el-Zaman 5 m
16 Morgan Mason Sameeha el-Ally 89 f
17 Cornelius Turner Carlo Ceazar Corpuz 74 m
18 Shaddaad el-Younes Bishr al-Qasim 34 m
19 Shaddaad el-Younes Sade Smith 47 f
20 Shaddaad el-Younes Edward Estrella 85 m
21 Shaddaad el-Younes Nichole Mcfarland 29 f
22 Carlo Ceazar Corpuz Aabdeen al-Hoque 24 m
23 Bishr al-Qasim Jubair el-Aly 46 m
24 Bishr al-Qasim Dalicia O'Donnell 63 f
25 Bishr al-Qasim Abdul Jaleel al-Amara 19 m
26 Bishr al-Qasim Hafsa al-Massoud 24 f
27 Nichole Mcfarland Qamraaa al-Rahim 9 f
28 Nichole Mcfarland Trever Manis 41 m
29 Nichole Mcfarland Maiya Vathanavarin 72 f
30 Nichole Mcfarland Ghaamid el-Zafar 6 m
31 Jubair el-Aly Nimesha Grossaint 9 f
32 Hafsa al-Massoud Kelly Runningbear-Paul 61 f
33 Hafsa al-Massoud James Welter 44 m
34 Trever Manis Austin Manheimer 71 m
35 Trever Manis Marco Martinez 34 m
36 Trever Manis Utkarsh Strausburg 75 m
37 Trever Manis Orville Stadelbauer 69 m
38 Trever Manis Jennifer Ouk 61 f
39 Trever Manis Amanda Cooper 67 f
40 Maiya Vathanavarin Nafeesa al-Zaher 64 f
41 Maiya Vathanavarin Sulaimaan al-Shabazz 11 m
42 Maiya Vathanavarin Savanna Gonzalez-Sanchez 59 f
43 Ghaamid el-Zafar Nawwaara el-Pasha 61 f
44 Ghaamid el-Zafar Saleet el-Mohammed 66 m
45 James Welter Shuaib al-Farooq 16 m
46 Austin Manheimer Christian Mendoza 81 m
47 Austin Manheimer Alexander Rivera 88 m
48 Jennifer Ouk Jameel Mosher 53 m
49 Jennifer Ouk Eraina Mcgee 53 f
50 Nafeesa al-Zaher Mia Floyd 45 f
51 Nafeesa al-Zaher Khongmong Hammond 42 m
52 Nafeesa al-Zaher Collin Chavez 42 m
53 Nafeesa al-Zaher Itzel Gonzales 78 f
54 Nawwaara el-Pasha Alexis Caramillo 35 f
55 Nawwaara el-Pasha Ronnie Scurlock 54 m
56 Nawwaara el-Pasha Brandon Maryland 54 m
57 Saleet el-Mohammed Shane Ahmad 68 m
58 Saleet el-Mohammed Ghaaliya al-Shaheed 3 f
59 Saleet el-Mohammed Exzinia Smith 44 f
60 Christian Mendoza Jamaal el-Shehadeh 35 m
61 Eraina Mcgee Joshua Nava Quiroz 23 m
62 Eraina Mcgee Rhiannon Freeland 62 f
63 Eraina Mcgee Deisha Beckner 35 f
64 Mia Floyd Nelly Reyez 90 f
65 Mia Floyd Nadheera el-Mohiuddin 25 f
66 Itzel Gonzales Renae Joyce 41 f
67 Ronnie Scurlock Cairra Trammell 17 m
68 Ronnie Scurlock Nakrista Ramirez-Solis 26 f
69 Shane Ahmad Madelyn Mckinney 61 f
70 Shane Ahmad Caroline Vargas Pena 46 f
71 Ghaaliya al-Shaheed Whitney Kim 57 f
72 Exzinia Smith Mathurin Curtis 8 m
73 Exzinia Smith Hissa al-Hammad 11 f
74 Rhiannon Freeland Yuvorn Huang 56 m
75 Deisha Beckner Chandel Duling 32 f
76 Deisha Beckner Kevin Shahi 63 m
77 Deisha Beckner Diksha Reichal 54 f
78 Deisha Beckner Yusuf Cha 22 m
79 Nadheera el-Mohiuddin Jazmine Sturgeon 67 f
80 Nadheera el-Mohiuddin Afaaf al-Azzi 83 f
81 Nadheera el-Mohiuddin Medhavi Nguyen 16 f
82 Nadheera el-Mohiuddin Russell Lathrop 38 m
83 Caroline Vargas Pena Kimiko Thompson 19 f
84 Mathurin Curtis Sally Richardson 37 f
85 Mathurin Curtis Markese Labadie 46 m
86 Mathurin Curtis Christian Maldonado 64 m
87 Kevin Shahi Laraena Batson 73 f
88 Kevin Shahi Monica Ye 13 f
89 Diksha Reichal Kashauna Yorks 72 f
90 Diksha Reichal Mark Miller 12 m
91 Jazmine Sturgeon Taylor Lange 52 f
92 Jazmine Sturgeon Carmelita Montoya 61 f
93 Jazmine Sturgeon Gloria Johnson 9 f
94 Jazmine Sturgeon Alexander Roy 9 m
95 Jazmine Sturgeon Habeeba el-Ahmad 42 f
96 Sally Richardson Aliyya el-Yassin 22 f
97 Laraena Batson Alicia Vue 29 f
98 Monica Ye Micah La 15 m
99 Monica Ye Cassandra Lor 69 f
100 Monica Ye Rashele Williams 17 f
101 Monica Ye Deviny Mcdonald 21 f
102 Monica Ye Daniel San 54 m
103 Monica Ye Shamari Bean 20 f
104 Monica Ye De'Chelle Norman 9 f
105 Carmelita Montoya Connor Bailey 26 m
106 Carmelita Montoya Lafaith Hopkins 80 f
107 Carmelita Montoya Isabella Medina 71 f
108 Carmelita Montoya Lauren Etsitty 57 f
109 Carmelita Montoya Shelby Tinoco 77 f
110 Alicia Vue Samuel Goodfellow 90 m
111 Rashele Williams Sapphire Bison 58 f
112 Rashele Williams Bertha Mohar 23 f
113 Isabella Medina Mu,Aawiya al-Kaba 35 m
114 Samuel Goodfellow Joshua Johnson 66 m
115 Bertha Mohar Andrew Garcia 62 m
116 Bertha Mohar Jennifer Silva 62 f
117 Bertha Mohar Megan Begay 34 f
118 Bertha Mohar Trevor Colligan 57 m
119 Mu,Aawiya al-Kaba Taaj el-Sarah 44 m
120 Mu,Aawiya al-Kaba Wen Kang Khan 22 m
121 Andrew Garcia Savannah Cohen 57 f
122 Andrew Garcia Nawfa el-Anwar 63 f
123 Trevor Colligan Yusri al-Amiri 7 m
124 Trevor Colligan Ryan Zheng 46 m
125 Trevor Colligan Henry Reichman 66 m
126 Taaj el-Sarah Sidqi al-Rahimi 4 m
127 Taaj el-Sarah Mastoor al-Imam 10 m
128 Savannah Cohen Muhaajir el-Reza 68 m
129 Savannah Cohen Shannon Armbrust 68 f
130 Savannah Cohen Orilea Diego 12 f
131 Nawfa el-Anwar Jez-Mas Marchman 51 m
132 Nawfa el-Anwar Kloe Avila 51 f
133 Ryan Zheng Weston Feuerstein 8 m
134 Henry Reichman Rebekah Jones Jr 55 f
135 Shannon Armbrust Madison Osse 77 f
136 Shannon Armbrust Merrill Jr Woods 22 m
137 Orilea Diego Sarah Griffith 2 f
138 Orilea Diego Kara Finken 53 f
139 Kloe Avila Elyse Tran 31 f
140 Kloe Avila Jumail al-Murad 77 m
141 Kloe Avila Raul Aguirre Molina 76 m
142 Kloe Avila Mikayla Smith 82 f
143 Kloe Avila Marissa Tollivoro 12 f
144 Sarah Griffith Mansoor al-Siddique 25 m
145 Sarah Griffith Nizaam al-Salame 76 m
146 Kara Finken Alexis Harding 14 f
147 Kara Finken Amanda Scharnell 31 f
148 Kara Finken Jaesung Fukuda 90 m
149 Kara Finken Unique Vigil 76 f
150 Raul Aguirre Molina Aldo Rodriguez-Ruiz 30 m
151 Mikayla Smith Rosemary Thammarath 32 f
152 Mansoor al-Siddique Tanya Mcadoo 78 f
153 Mansoor al-Siddique Shawn Morgan 75 m
154 Mansoor al-Siddique Asysa Robinson 76 f
155 Nizaam al-Salame Najlaa al-Salam 88 f
156 Alexis Harding Sakeena al-Abdoo 80 f
157 Alexis Harding Richard Prum 41 m
158 Alexis Harding Shahla al-Jaffer 78 f
159 Alexis Harding Jaycee Baker 11 m
160 Alexis Harding Rida al-Hussein 57 m
161 Unique Vigil Deliah Vannice 79 f
162 Tanya Mcadoo Kailey Braden 28 f
163 Tanya Mcadoo Raadiya el-Chahine 2 f
164 Shawn Morgan Payton Dodd 16 f
165 Asysa Robinson Janie Santa Cruz 82 f
166 Sakeena al-Abdoo Maritza Winkler 51 f
167 Sakeena al-Abdoo Shabeeba al-Jafari 54 f
168 Richard Prum Keeman Naylor 76 m
169 Richard Prum Yesenia Alexander 56 f
170 Richard Prum Alvaro Romero 5 m
171 Shahla al-Jaffer Lane Rodriguez 1 m
172 Kailey Braden Ka Lee 44 m
173 Kailey Braden Qaaid al-Shaker 76 m
174 Janie Santa Cruz Munsif al-Ozer 3 m
175 Alvaro Romero Sharon Watson 15 f
176 Alvaro Romero Danielle Ouellette 19 f
177 Alvaro Romero Abdur Rasheed al-Salahuddin 76 m
178 Lane Rodriguez Trevor Hahs 12 m
179 Qaaid al-Shaker Abdul Kareem el-Salem 43 m
180 Qaaid al-Shaker Sharaf al-Akbari 9 m
181 Qaaid al-Shaker Samuel Videtzky 90 m
182 Qaaid al-Shaker Fikra el-Bilal 7 f
183 Munsif al-Ozer Jeremy Stockinger 15 m
184 Munsif al-Ozer Raul Chavez 54 m
185 Danielle Ouellette Shalise Peters-Maloy 64 f
186 Danielle Ouellette Lizbeth Herrera 21 f
187 Danielle Ouellette Yael Pruitt 37 f
188 Danielle Ouellette Jay Herman 35 m
189 Danielle Ouellette Nadheera al-Farrah 70 f
190 Abdur Rasheed al-Salahuddin Jason Ahsan 70 m
191 Abdur Rasheed al-Salahuddin Grant Jiron 59 m
192 Abdur Rasheed al-Salahuddin Brittany Myers 77 f
193 Abdur Rasheed al-Salahuddin Tracy Conners 75 m
194 Abdur Rasheed al-Salahuddin Manaara el-Saba 84 f
195 Samuel Videtzky Amelia Gallegos 18 f
196 Samuel Videtzky Brieannah Coles 79 f
197 Shalise Peters-Maloy T'Koia Waddles 14 f
198 Shalise Peters-Maloy Sarah Vu 49 f
199 Shalise Peters-Maloy Mason Powells 56 m
200 Shalise Peters-Maloy Ashley Dotson 76 f
201 Jay Herman Abdul Ghafoor al-Firman 41 m
202 Jay Herman Chasity Suetos 16 f
203 Jay Herman Tyler Vigil 3 m
204 Manaara el-Saba Vincent Arnick 29 m
205 Manaara el-Saba Billye Dalrymple 89 f
206 Manaara el-Saba Devundrick Mcgrier 24 m
207 Manaara el-Saba Damian Sotelo 31 m
208 Amelia Gallegos Razeen al-Sala 39 m
209 Amelia Gallegos Rusty Figueroa 32 m
210 Amelia Gallegos Emma Jones 9 f
211 Brieannah Coles Randall Asad 82 m
212 Sarah Vu Cam Tu Quilon 39 f
213 Mason Powells Fisayo Wallace 12 m
214 Ashley Dotson Bianca Gaytan 54 f
215 Ashley Dotson Bao-Tran Hasegawa 68 f
216 Abdul Ghafoor al-Firman Antonio John III 73 m
217 Abdul Ghafoor al-Firman Jacob Helfer 85 m
218 Abdul Ghafoor al-Firman Alejandra Purdham 52 f
219 Abdul Ghafoor al-Firman Frankie Armstrong 3 f
220 Vincent Arnick Yahya el-Aslam 22 m
221 Vincent Arnick Katherine Redhorse 5 f
222 Razeen al-Sala Oscar Mora 66 m
223 Razeen al-Sala Nabeel el-Karam 68 m
224 Rusty Figueroa Kamaaluddeen al-Saidi 38 m
225 Rusty Figueroa Sandra Rodriquez 57 f
226 Rusty Figueroa Joshua Henzler 48 m
227 Emma Jones Julisa Cortez 75 f
228 Cam Tu Quilon Ameen al-Shakir 8 m
229 Alejandra Purdham Azmi el-Safar 28 m
230 Alejandra Purdham Khampane Kazemi 21 m
231 Yahya el-Aslam Laaiqa el-Azizi 2 f
232 Yahya el-Aslam Jose Lopez 84 m
233 Nabeel el-Karam Mreenal Solberg 52 f
234 Nabeel el-Karam Kevin Behr 58 m
235 Nabeel el-Karam Khyleah Jones 29 f
236 Sandra Rodriquez Eliora Baldwin 7 f
237 Ameen al-Shakir Quinn Barrett 30 m
238 Ameen al-Shakir Gina Mcmaster 11 f
239 Laaiqa el-Azizi Bryanna Medrano 71 f
240 Laaiqa el-Azizi Alex Salaz 50 m
241 Jose Lopez Abeer el-Kazi 77 f
242 Jose Lopez Marques Rice 43 m
243 Jose Lopez Haakima el-Kanan 19 f
244 Jose Lopez Andrew Zaragoza-Madrid 40 m
245 Jose Lopez Alec Cross 49 m
246 Jose Lopez Braxton Lefholz 11 m
247 Jose Lopez Richard Miller 15 m
248 Jose Lopez Roy Coleman 61 m
249 Khyleah Jones Julanne El-Amin 46 f
250 Khyleah Jones Jason Sowards 69 m
251 Khyleah Jones Yeeleng Tran 69 m
252 Khyleah Jones Isaac Reid 38 m
253 Quinn Barrett Lawrence Williams 28 m
254 Quinn Barrett Adrian Anaya 82 m
255 Bryanna Medrano Amanda Wilson 45 f
256 Bryanna Medrano Azza el-Husain 47 f
257 Marques Rice Colette Torres 19 f
258 Andrew Zaragoza-Madrid Kamaaluddeen al-Semaan 85 m
259 Julanne El-Amin Esmeralda Escobar 24 f
260 Julanne El-Amin Jose Luna 46 m
261 Jason Sowards Ummu Kulthoom al-Ghaffari 71 f
262 Jason Sowards Samuel Mcclaskey 69 m
263 Yeeleng Tran Luna Vigil 4 f
264 Yeeleng Tran Jasmine Evans 31 f
265 Isaac Reid Gericko Griego 18 m
266 Isaac Reid Javon Jenkins 16 m
267 Isaac Reid Clifton Charron 53 m
268 Lawrence Williams Ashley Allen 62 f
269 Lawrence Williams Saeed el-Abdallah 87 m
270 Adrian Anaya Yeun Jung Khanom 28 f
271 Adrian Anaya Jazmine Berry 42 f
272 Colette Torres Tyree Reeves 42 m
273 Jose Luna Cuauhtemoc Martinez 84 m
274 Jose Luna Tawheed al-Noorani 29 m
275 Ummu Kulthoom al-Ghaffari Zuhaira al-Mohamed 47 f
276 Ummu Kulthoom al-Ghaffari Zachary Stuart 14 m
277 Luna Vigil Naseer el-Javed 48 m
278 Javon Jenkins Alexis Stafford 89 f
279 Javon Jenkins Razeen el-Azad 39 m
280 Javon Jenkins Kaylee Valverde 17 f
281 Clifton Charron Jordan Marshall 20 f
282 Clifton Charron Marissa Iron Cloud-Gresko 61 f
283 Zachary Stuart Marcus Erman 6 m
284 Naseer el-Javed Ismad al-Badour 28 m
285 Alexis Stafford Colin Moreno 83 m
286 Alexis Stafford Lydia Major 68 f
287 Alexis Stafford Fidda el-Satter 47 f
288 Jordan Marshall Daifallah al-Shaer 73 m
289 Jordan Marshall Farhat al-Masih 24 f
290 Jordan Marshall Firdaus el-Farha 42 f
291 Jordan Marshall Jane David 71 f
292 Marcus Erman Corina Morales 9 f
293 Marcus Erman Alexandra Lucero 78 f
294 Ismad al-Badour Raabia el-Saidi 24 f
295 Ismad al-Badour Justin Delori 61 m
296 Firdaus el-Farha Lael Holguin 49 f
297 Firdaus el-Farha Janalen Nguyen 53 f
298 Firdaus el-Farha Sanaaa el-Mohamed 63 f
299 Jane David Judy Ahuna 29 f
300 Jane David Naseera al-Arif 76 f
301 Jane David Andrew Sun 69 m
302 Corina Morales Bailey Walker 63 f
303 Corina Morales Ty Rains 50 m
304 Corina Morales Maribel Rangel 58 f
305 Janalen Nguyen Logan Major 88 m
306 Janalen Nguyen Javier Valdez 7 m
307 Janalen Nguyen Jennifer Mallot 51 f
308 Naseera al-Arif Richard Kelemeni 47 m
309 Naseera al-Arif Kyana Ludwig 45 f
310 Naseera al-Arif Jessie Berry 83 f
311 Naseera al-Arif Luis Ellis 30 m
312 Andrew Sun Jazmyn Guyton 41 f
313 Ty Rains Asiah Sheppard 15 f
314 Ty Rains Katryna Stevens 27 f
315 Ty Rains Gia Garcia 88 f
316 Javier Valdez Hannah Wright 74 f
317 Kyana Ludwig Ryan Gutierrez 1 m
318 Kyana Ludwig Autumn Perez-Lozano 84 f
319 Jessie Berry John Trujillo 79 m
320 Jazmyn Guyton Azzaam al-Azad 54 m
321 Jazmyn Guyton Saafiyya el-Idris 24 f
322 Jazmyn Guyton Nicholas Taylor 37 m
323 Gia Garcia Mujahid el-Zaman 3 m
324 Gia Garcia Stephanie Vincelet 48 f
325 John Trujillo Haley Hamlin 82 f
326 Haley Hamlin Larissa Herrera 30 f
date_first_contact date_last_contact was_case status
1 2022-12-29 2023-01-03 Y case
2 2022-12-28 2023-01-01 Y case
3 2022-12-26 2023-01-02 N lost_to_followup
4 2022-12-28 2023-01-04 Y case
5 2022-12-31 2023-01-04 Y case
6 2022-12-31 2023-01-06 Y case
7 2023-01-01 2023-01-02 N under_followup
8 2023-01-03 2023-01-09 N under_followup
9 2023-01-02 2023-01-07 Y case
10 2023-01-03 2023-01-07 Y case
11 2023-01-03 2023-01-11 Y case
12 2022-12-30 2023-01-08 N under_followup
13 2023-01-04 2023-01-09 Y case
14 2023-01-09 2023-01-17 N under_followup
15 2023-01-07 2023-01-16 N under_followup
16 2023-01-11 2023-01-13 N under_followup
17 2023-01-09 2023-01-17 Y case
18 2023-01-07 2023-01-14 Y case
19 2023-01-08 2023-01-13 N under_followup
20 2023-01-09 2023-01-15 N under_followup
21 2023-01-07 2023-01-17 Y case
22 2023-01-12 2023-01-16 N under_followup
23 2023-01-08 2023-01-15 Y case
24 2023-01-11 2023-01-14 N under_followup
25 2023-01-08 2023-01-13 N lost_to_followup
26 2023-01-09 2023-01-16 Y case
27 2023-01-07 2023-01-15 N under_followup
28 2023-01-08 2023-01-14 Y case
29 2023-01-07 2023-01-13 Y case
30 2023-01-10 2023-01-16 Y case
31 2023-01-10 2023-01-17 N under_followup
32 2023-01-12 2023-01-15 Y case
33 2023-01-12 2023-01-18 Y case
34 2023-01-16 2023-01-21 Y case
35 2023-01-20 2023-01-23 N lost_to_followup
36 2023-01-19 2023-01-25 N lost_to_followup
37 2023-01-19 2023-01-23 Y case
38 2023-01-18 2023-01-24 Y case
39 2023-01-20 2023-01-26 N lost_to_followup
40 2023-01-17 2023-01-21 Y case
41 2023-01-15 2023-01-20 N under_followup
42 2023-01-14 2023-01-21 N under_followup
43 2023-01-18 2023-01-21 Y case
44 2023-01-19 2023-01-25 Y case
45 2023-01-12 2023-01-18 N under_followup
46 2023-01-23 2023-01-28 Y case
47 2023-01-26 2023-01-29 N under_followup
48 2023-01-19 2023-01-28 N lost_to_followup
49 2023-01-20 2023-01-28 Y case
50 2023-01-22 2023-01-25 Y case
51 2023-01-22 2023-01-26 N under_followup
52 2023-01-20 2023-01-27 Y case
53 2023-01-23 2023-01-29 Y case
54 2023-01-17 2023-01-24 Y case
55 2023-01-21 2023-01-26 Y case
56 2023-01-18 2023-01-26 N under_followup
57 2023-01-17 2023-01-22 Y case
58 2023-01-15 2023-01-22 Y case
59 2023-01-20 2023-01-23 Y case
60 2023-01-28 2023-01-30 N under_followup
61 2023-01-26 2023-02-02 N unknown
62 2023-01-27 2023-01-31 Y case
63 2023-01-26 2023-02-01 Y case
64 2023-01-28 2023-02-02 Y case
65 2023-01-27 2023-01-30 Y case
66 2023-01-31 2023-02-08 N under_followup
67 2023-01-24 2023-01-27 N under_followup
68 2023-01-20 2023-01-27 N lost_to_followup
69 2023-01-23 2023-01-30 N under_followup
70 2023-01-19 2023-01-28 Y case
71 2023-01-21 2023-01-25 N lost_to_followup
72 2023-01-25 2023-02-02 Y case
73 2023-01-28 2023-02-04 N lost_to_followup
74 2023-01-27 2023-02-05 N under_followup
75 2023-01-25 2023-02-04 N under_followup
76 2023-01-26 2023-02-01 Y case
77 2023-01-26 2023-01-30 Y case
78 2023-01-25 2023-02-03 N lost_to_followup
79 2023-01-31 2023-02-02 Y case
80 2023-01-29 2023-02-04 N under_followup
81 2023-01-28 2023-02-02 N under_followup
82 2023-01-30 2023-02-03 N under_followup
83 2023-01-29 2023-02-02 N under_followup
84 2023-01-30 2023-02-05 Y case
85 2023-01-30 2023-02-02 N under_followup
86 2023-01-29 2023-02-04 N unknown
87 2023-01-28 2023-01-30 Y case
88 2023-01-24 2023-02-03 Y case
89 2023-01-28 2023-02-05 Y case
90 2023-01-28 2023-02-03 N under_followup
91 2023-01-31 2023-02-08 N unknown
92 2023-02-03 2023-02-05 Y case
93 2023-02-02 2023-02-07 N under_followup
94 2023-01-30 2023-02-05 N lost_to_followup
95 2023-01-28 2023-02-05 N under_followup
96 2023-01-31 2023-02-04 Y case
97 2023-01-27 2023-02-02 Y case
98 2023-01-31 2023-02-07 N under_followup
99 2023-01-27 2023-02-06 N under_followup
100 2023-01-28 2023-02-09 Y case
101 2023-01-29 2023-02-03 N under_followup
102 2023-01-31 2023-02-07 N lost_to_followup
103 2023-02-02 2023-02-05 N under_followup
104 2023-01-31 2023-02-07 N under_followup
105 2023-01-31 2023-02-07 N under_followup
106 2023-01-29 2023-02-10 N under_followup
107 2023-01-31 2023-02-10 Y case
108 2023-01-31 2023-02-06 N under_followup
109 2023-01-30 2023-02-08 N under_followup
110 2023-01-31 2023-02-05 Y case
111 2023-02-02 2023-02-12 N under_followup
112 2023-02-04 2023-02-08 Y case
113 2023-02-10 2023-02-17 Y case
114 2023-02-08 2023-02-12 N lost_to_followup
115 2023-02-08 2023-02-13 Y case
116 2023-02-11 2023-02-15 N under_followup
117 2023-02-10 2023-02-14 N under_followup
118 2023-02-10 2023-02-12 Y case
119 2023-02-10 2023-02-16 Y case
120 2023-02-09 2023-02-21 N under_followup
121 2023-02-24 2023-03-01 Y case
122 2023-02-21 2023-02-26 Y case
123 2023-02-23 2023-03-01 N lost_to_followup
124 2023-02-20 2023-02-26 Y case
125 2023-02-22 2023-02-26 Y case
126 2023-02-15 2023-02-22 N unknown
127 2023-02-13 2023-02-19 N under_followup
128 2023-02-28 2023-03-03 N under_followup
129 2023-03-01 2023-03-07 Y case
130 2023-03-01 2023-03-04 Y case
131 2023-03-06 2023-03-11 N under_followup
132 2023-02-27 2023-03-13 Y case
133 2023-02-25 2023-03-02 N under_followup
134 2023-02-24 2023-03-05 N under_followup
135 2023-03-05 2023-03-12 N under_followup
136 2023-03-05 2023-03-11 N under_followup
137 2023-03-09 2023-03-11 Y case
138 2023-03-09 2023-03-13 Y case
139 2023-03-13 2023-03-23 N lost_to_followup
140 2023-03-16 2023-03-18 N lost_to_followup
141 2023-03-15 2023-03-20 Y case
142 2023-03-16 2023-03-23 Y case
143 2023-03-14 2023-03-22 N under_followup
144 2023-03-08 2023-03-15 Y case
145 2023-03-07 2023-03-14 Y case
146 2023-03-09 2023-03-11 Y case
147 2023-03-07 2023-03-10 N under_followup
148 2023-03-03 2023-03-12 N unknown
149 2023-03-03 2023-03-13 Y case
150 2023-03-17 2023-03-28 N under_followup
151 2023-03-17 2023-03-24 N under_followup
152 2023-03-11 2023-03-22 Y case
153 2023-03-14 2023-03-19 Y case
154 2023-03-14 2023-03-16 Y case
155 2023-03-12 2023-03-15 N under_followup
156 2023-03-09 2023-03-18 Y case
157 2023-03-08 2023-03-16 Y case
158 2023-03-11 2023-03-18 Y case
159 2023-03-12 2023-03-19 N under_followup
160 2023-03-11 2023-03-18 N under_followup
161 2023-03-08 2023-03-14 N under_followup
162 2023-03-10 2023-03-18 Y case
163 2023-03-14 2023-03-19 Y case
164 2023-03-23 2023-03-27 N lost_to_followup
165 2023-03-20 2023-03-26 Y case
166 2023-03-16 2023-03-21 N under_followup
167 2023-03-14 2023-03-19 N under_followup
168 2023-03-16 2023-03-22 N under_followup
169 2023-03-16 2023-03-21 N under_followup
170 2023-03-15 2023-03-19 Y case
171 2023-03-13 2023-03-20 Y case
172 2023-03-14 2023-03-16 Y case
173 2023-03-13 2023-03-15 Y case
174 2023-03-24 2023-03-28 Y case
175 2023-03-20 2023-03-27 Y case
176 2023-03-18 2023-03-23 Y case
177 2023-03-17 2023-03-23 Y case
178 2023-03-16 2023-03-20 N under_followup
179 2023-03-12 2023-03-16 N under_followup
180 2023-03-15 2023-03-22 N under_followup
181 2023-03-12 2023-03-21 Y case
182 2023-03-12 2023-03-17 N under_followup
183 2023-03-23 2023-04-01 N lost_to_followup
184 2023-03-29 2023-03-31 N lost_to_followup
185 2023-03-23 2023-03-28 Y case
186 2023-03-24 2023-03-27 N unknown
187 2023-03-22 2023-03-29 N under_followup
188 2023-03-22 2023-03-30 Y case
189 2023-03-24 2023-03-28 N under_followup
190 2023-03-23 2023-03-29 N under_followup
191 2023-03-21 2023-03-30 N under_followup
192 2023-03-22 2023-03-30 N under_followup
193 2023-03-23 2023-03-29 N under_followup
194 2023-03-24 2023-03-27 Y case
195 2023-03-22 2023-03-27 Y case
196 2023-03-23 2023-04-01 Y case
197 2023-03-31 2023-04-06 N under_followup
198 2023-04-03 2023-04-06 Y case
199 2023-03-31 2023-04-07 Y case
200 2023-04-01 2023-04-04 Y case
201 2023-03-26 2023-04-02 Y case
202 2023-03-27 2023-04-03 N under_followup
203 2023-03-29 2023-03-29 N under_followup
204 2023-03-24 2023-04-02 Y case
205 2023-03-26 2023-03-29 N under_followup
206 2023-03-25 2023-03-31 N under_followup
207 2023-03-20 2023-04-03 N under_followup
208 2023-03-24 2023-04-01 Y case
209 2023-03-26 2023-04-03 Y case
210 2023-03-29 2023-03-31 Y case
211 2023-03-25 2023-03-28 N under_followup
212 2023-04-04 2023-04-10 Y case
213 2023-04-02 2023-04-05 Y case
214 2023-04-07 2023-04-08 N under_followup
215 2023-04-04 2023-04-11 N under_followup
216 2023-03-31 2023-04-03 N under_followup
217 2023-03-30 2023-04-06 N under_followup
218 2023-03-30 2023-04-07 Y case
219 2023-03-30 2023-04-08 N under_followup
220 2023-03-31 2023-04-03 Y case
221 2023-03-31 2023-04-04 N lost_to_followup
222 2023-04-01 2023-04-07 N under_followup
223 2023-04-02 2023-04-08 Y case
224 2023-03-29 2023-04-03 N lost_to_followup
225 2023-03-31 2023-04-04 Y case
226 2023-03-27 2023-04-06 N under_followup
227 2023-04-04 2023-04-09 N under_followup
228 2023-04-09 2023-04-12 Y case
229 2023-04-06 2023-04-11 Y case
230 2023-04-09 2023-04-12 N under_followup
231 2023-04-01 2023-04-10 Y case
232 2023-04-02 2023-04-06 Y case
233 2023-04-03 2023-04-09 Y case
234 2023-04-06 2023-04-11 Y case
235 2023-04-03 2023-04-11 Y case
236 2023-04-05 2023-04-08 N unknown
237 2023-04-09 2023-04-14 Y case
238 2023-04-08 2023-04-15 N unknown
239 2023-03-30 2023-04-08 Y case
240 2023-03-30 2023-04-05 N lost_to_followup
241 2023-04-04 2023-04-14 N under_followup
242 2023-04-02 2023-04-15 Y case
243 2023-04-07 2023-04-11 N unknown
244 2023-04-08 2023-04-12 Y case
245 2023-04-08 2023-04-12 N under_followup
246 2023-04-04 2023-04-11 N under_followup
247 2023-04-08 2023-04-14 N under_followup
248 2023-04-07 2023-04-14 N lost_to_followup
249 2023-04-09 2023-04-17 Y case
250 2023-04-09 2023-04-11 Y case
251 2023-04-08 2023-04-13 Y case
252 2023-04-06 2023-04-14 Y case
253 2023-04-11 2023-04-15 Y case
254 2023-04-13 2023-04-19 Y case
255 2023-04-14 2023-04-16 N lost_to_followup
256 2023-04-14 2023-04-16 N under_followup
257 2023-04-11 2023-04-20 Y case
258 2023-04-13 2023-04-18 N lost_to_followup
259 2023-04-13 2023-04-16 N under_followup
260 2023-04-13 2023-04-21 Y case
261 2023-04-10 2023-04-20 Y case
262 2023-04-10 2023-04-16 N unknown
263 2023-04-14 2023-04-22 Y case
264 2023-04-15 2023-04-26 Y case
265 2023-04-15 2023-04-22 N unknown
266 2023-04-19 2023-04-27 Y case
267 2023-04-20 2023-04-23 Y case
268 2023-04-13 2023-04-19 N lost_to_followup
269 2023-04-14 2023-04-21 N under_followup
270 2023-04-13 2023-04-17 N under_followup
271 2023-04-14 2023-04-19 N under_followup
272 2023-04-13 2023-04-16 N lost_to_followup
273 2023-04-23 2023-04-26 N under_followup
274 2023-04-24 2023-04-30 N under_followup
275 2023-04-12 2023-04-16 N under_followup
276 2023-04-11 2023-04-14 Y case
277 2023-04-23 2023-04-29 Y case
278 2023-04-15 2023-04-24 Y case
279 2023-04-16 2023-04-24 Y case
280 2023-04-14 2023-04-21 N unknown
281 2023-04-16 2023-04-22 Y case
282 2023-04-20 2023-04-22 N under_followup
283 2023-04-28 2023-05-01 Y case
284 2023-04-23 2023-05-01 Y case
285 2023-04-22 2023-04-27 N under_followup
286 2023-04-22 2023-04-27 N under_followup
287 2023-04-23 2023-04-26 N under_followup
288 2023-04-21 2023-04-23 N under_followup
289 2023-04-19 2023-04-23 N under_followup
290 2023-04-19 2023-04-23 Y case
291 2023-04-16 2023-04-22 Y case
292 2023-04-29 2023-05-09 Y case
293 2023-04-30 2023-05-05 N under_followup
294 2023-05-02 2023-05-06 N under_followup
295 2023-05-03 2023-05-07 Y case
296 2023-05-01 2023-05-04 N under_followup
297 2023-04-25 2023-05-05 Y case
298 2023-04-27 2023-05-03 N lost_to_followup
299 2023-04-21 2023-04-28 N unknown
300 2023-04-19 2023-05-02 Y case
301 2023-04-18 2023-04-25 Y case
302 2023-05-03 2023-05-08 N unknown
303 2023-05-01 2023-05-07 Y case
304 2023-05-03 2023-05-11 N unknown
305 2023-04-28 2023-05-05 N lost_to_followup
306 2023-04-25 2023-05-06 Y case
307 2023-04-30 2023-05-08 N under_followup
308 2023-04-20 2023-04-24 N lost_to_followup
309 2023-04-19 2023-04-26 Y case
310 2023-04-20 2023-04-27 Y case
311 2023-04-22 2023-04-23 N under_followup
312 2023-04-25 2023-04-30 Y case
313 2023-05-06 2023-05-10 N lost_to_followup
314 2023-05-06 2023-05-10 N lost_to_followup
315 2023-05-05 2023-05-10 Y case
316 2023-05-08 2023-05-09 N under_followup
317 2023-04-21 2023-04-30 N under_followup
318 2023-04-22 2023-05-01 N under_followup
319 2023-04-22 2023-04-28 Y case
320 2023-04-22 2023-04-30 N under_followup
321 2023-04-25 2023-04-29 N under_followup
322 2023-04-21 2023-04-28 N lost_to_followup
323 2023-05-08 2023-05-12 N under_followup
324 2023-05-04 2023-05-15 N unknown
325 2023-04-27 2023-05-03 Y case
326 2023-05-03 2023-05-10 N under_followup
sim_outbreak works as expected
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death)
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Kevin Pullen suspected m 1 2023-01-01 2023-01-01
2 2 Carisa Flores-Gonzalez confirmed f 29 2023-01-01 2023-01-01
3 3 Maazin el-Othman confirmed m 78 2023-01-01 2023-01-01
4 5 Faisal el-Vaziri suspected m 70 2023-01-01 2023-01-01
5 6 Lynsey Duron confirmed f 28 2023-01-01 2023-01-01
6 8 Lilibeth Black confirmed f 61 2023-01-01 2023-01-01
7 11 Kaleb Natarelli confirmed m 86 2023-01-01 2023-01-01
8 12 Collin Stimack confirmed m 71 2023-01-01 2023-01-01
9 13 Marquaja Johnson confirmed f 51 2023-01-01 2023-01-01
10 18 Corey Alcala probable m 49 2023-01-02 2023-01-02
11 20 Erin Payson suspected f 7 2023-01-02 2023-01-02
12 22 Sean Shrestha confirmed m 24 2023-01-02 2023-01-02
date_admission outcome date_outcome date_first_contact date_last_contact
1 2023-01-04 died 2023-01-18 <NA> <NA>
2 2023-01-02 died 2023-02-09 2022-12-30 2023-01-08
3 <NA> recovered <NA> 2022-12-31 2023-01-05
4 2023-01-05 recovered <NA> 2022-12-31 2023-01-04
5 2023-01-14 recovered <NA> 2022-12-29 2023-01-02
6 <NA> recovered <NA> 2022-12-28 2023-01-05
7 <NA> recovered <NA> 2022-12-30 2023-01-04
8 2023-01-02 recovered <NA> 2022-12-28 2023-01-09
9 <NA> recovered <NA> 2022-12-29 2023-01-04
10 <NA> recovered <NA> 2022-12-29 2023-01-04
11 <NA> recovered <NA> 2022-12-31 2023-01-03
12 <NA> recovered <NA> 2022-12-27 2023-01-05
ct_value
1 NA
2 25.8
3 24.9
4 NA
5 24.5
6 26.4
7 27.3
8 20.2
9 26.1
10 NA
11 NA
12 25.7
$contacts
from to age sex date_first_contact
1 Kevin Pullen Carisa Flores-Gonzalez 29 f 2022-12-30
2 Kevin Pullen Maazin el-Othman 78 m 2022-12-31
3 Carisa Flores-Gonzalez Katelyn Catlin 22 f 2022-12-30
4 Carisa Flores-Gonzalez Faisal el-Vaziri 70 m 2022-12-31
5 Maazin el-Othman Lynsey Duron 28 f 2022-12-29
6 Maazin el-Othman Amaani al-Gaber 37 f 2022-12-27
7 Maazin el-Othman Lilibeth Black 61 f 2022-12-28
8 Faisal el-Vaziri Jorge Marten 46 m 2022-12-28
9 Lynsey Duron Jacy Cousins 67 f 2022-12-29
10 Lilibeth Black Kaleb Natarelli 86 m 2022-12-30
11 Lilibeth Black Collin Stimack 71 m 2022-12-28
12 Lilibeth Black Marquaja Johnson 51 f 2022-12-29
13 Kaleb Natarelli Nicholas Orgill 44 m 2022-12-28
14 Kaleb Natarelli Kayla Tudor 49 f 2022-12-30
15 Kaleb Natarelli Maria Eberhart 60 f 2022-12-30
16 Collin Stimack Katja Muetz 56 f 2022-12-24
17 Marquaja Johnson Corey Alcala 49 m 2022-12-29
18 Marquaja Johnson Francisco Zapata Morales 50 m 2022-12-30
19 Marquaja Johnson Erin Payson 7 f 2022-12-31
20 Marquaja Johnson Kevin Waid 20 m 2022-12-29
21 Corey Alcala Sean Shrestha 24 m 2022-12-27
date_last_contact was_case status
1 2023-01-08 Y case
2 2023-01-05 Y case
3 2023-01-03 N under_followup
4 2023-01-04 Y case
5 2023-01-02 Y case
6 2023-01-01 N under_followup
7 2023-01-05 Y case
8 2023-01-02 N lost_to_followup
9 2023-01-04 N lost_to_followup
10 2023-01-04 Y case
11 2023-01-09 Y case
12 2023-01-04 Y case
13 2023-01-04 N under_followup
14 2023-01-02 N under_followup
15 2023-01-05 N under_followup
16 2023-01-04 N unknown
17 2023-01-04 Y case
18 2023-01-03 N lost_to_followup
19 2023-01-03 Y case
20 2023-01-04 N lost_to_followup
21 2023-01-05 Y case
sim_outbreak works as expected with anonymised
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death,
anonymise = TRUE)
Output
$linelist
id case_name case_type sex age date_onset date_reporting date_admission
1 1 OvsRrRMCAJ confirmed m 1 2023-01-01 2023-01-01 2023-01-04
2 2 FEY3qKY39Z probable f 29 2023-01-01 2023-01-01 2023-01-02
3 3 yiuuoY8Kxn confirmed m 78 2023-01-01 2023-01-01 <NA>
4 5 Huaqm1SzNb probable m 70 2023-01-01 2023-01-01 2023-01-05
5 6 O5h4yEtT6t suspected f 28 2023-01-01 2023-01-01 2023-01-14
6 8 8e6yKFNmyd probable f 61 2023-01-01 2023-01-01 <NA>
7 11 Lkhw9tYeb1 confirmed m 86 2023-01-01 2023-01-01 <NA>
8 12 elczXnmE3U suspected m 71 2023-01-01 2023-01-01 2023-01-02
9 13 4HDzSVgVAW confirmed f 51 2023-01-01 2023-01-01 <NA>
10 18 To9HLY9VZd probable m 49 2023-01-02 2023-01-02 <NA>
11 20 czwJ3WvUcV confirmed f 7 2023-01-02 2023-01-02 <NA>
12 22 vu5Ak6RZkf confirmed m 24 2023-01-02 2023-01-02 <NA>
outcome date_outcome date_first_contact date_last_contact ct_value
1 died 2023-01-18 <NA> <NA> 26.4
2 died 2023-02-09 2022-12-30 2023-01-08 NA
3 recovered <NA> 2022-12-31 2023-01-05 26.1
4 recovered <NA> 2022-12-31 2023-01-04 NA
5 recovered <NA> 2022-12-29 2023-01-02 NA
6 recovered <NA> 2022-12-28 2023-01-05 NA
7 recovered <NA> 2022-12-30 2023-01-04 23.9
8 recovered <NA> 2022-12-28 2023-01-09 NA
9 recovered <NA> 2022-12-29 2023-01-04 22.3
10 recovered <NA> 2022-12-29 2023-01-04 NA
11 recovered <NA> 2022-12-31 2023-01-03 24.2
12 recovered <NA> 2022-12-27 2023-01-05 25.6
$contacts
from to age sex date_first_contact date_last_contact was_case
1 OvsRrRMCAJ FEY3qKY39Z 29 f 2022-12-30 2023-01-08 Y
2 OvsRrRMCAJ yiuuoY8Kxn 78 m 2022-12-31 2023-01-05 Y
3 FEY3qKY39Z g7AzDS6oXf 22 f 2022-12-30 2023-01-03 N
4 FEY3qKY39Z Huaqm1SzNb 70 m 2022-12-31 2023-01-04 Y
5 yiuuoY8Kxn O5h4yEtT6t 28 f 2022-12-29 2023-01-02 Y
6 yiuuoY8Kxn ejRt34oCba 37 f 2022-12-27 2023-01-01 N
7 yiuuoY8Kxn 8e6yKFNmyd 61 f 2022-12-28 2023-01-05 Y
8 Huaqm1SzNb PL7XeZaLTm 46 m 2022-12-28 2023-01-02 N
9 O5h4yEtT6t hWsVUBVWYT 67 f 2022-12-29 2023-01-04 N
10 8e6yKFNmyd Lkhw9tYeb1 86 m 2022-12-30 2023-01-04 Y
11 8e6yKFNmyd elczXnmE3U 71 m 2022-12-28 2023-01-09 Y
12 8e6yKFNmyd 4HDzSVgVAW 51 f 2022-12-29 2023-01-04 Y
13 Lkhw9tYeb1 QihvSfYVAR 44 m 2022-12-28 2023-01-04 N
14 Lkhw9tYeb1 DjDafq8m2z 49 f 2022-12-30 2023-01-02 N
15 Lkhw9tYeb1 bFUJRewLYt 60 f 2022-12-30 2023-01-05 N
16 elczXnmE3U BBlIdUTzmc 56 f 2022-12-24 2023-01-04 N
17 4HDzSVgVAW To9HLY9VZd 49 m 2022-12-29 2023-01-04 Y
18 4HDzSVgVAW zuuT3p6Kxu 50 m 2022-12-30 2023-01-03 N
19 4HDzSVgVAW czwJ3WvUcV 7 f 2022-12-31 2023-01-03 Y
20 4HDzSVgVAW V4dJ6ZKaUK 20 m 2022-12-29 2023-01-04 N
21 To9HLY9VZd vu5Ak6RZkf 24 m 2022-12-27 2023-01-05 Y
status
1 case
2 case
3 under_followup
4 case
5 case
6 under_followup
7 case
8 under_followup
9 lost_to_followup
10 case
11 case
12 case
13 under_followup
14 under_followup
15 under_followup
16 unknown
17 case
18 under_followup
19 case
20 under_followup
21 case
sim_outbreak works as expected with age-strat risks
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death,
hosp_risk = age_dep_hosp_risk, hosp_death_risk = age_dep_hosp_death_risk,
non_hosp_death_risk = age_dep_non_hosp_death_risk)
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Wajdi al-Demian probable m 1 2023-01-01 2023-01-01
2 2 Durine Cobb confirmed f 29 2023-01-01 2023-01-01
3 3 Raaid el-Diab suspected m 78 2023-01-01 2023-01-01
4 5 Nickolas Nault confirmed m 70 2023-01-01 2023-01-01
5 6 Shanta Holiday suspected f 28 2023-01-01 2023-01-01
6 8 Mackenzie Ahn probable f 61 2023-01-01 2023-01-01
7 11 Mubarak el-Vaziri probable m 86 2023-01-01 2023-01-01
8 12 Raakaan al-Shams suspected m 71 2023-01-01 2023-01-01
9 13 Mikhaila Carlson confirmed f 51 2023-01-01 2023-01-01
10 18 Tae Woo Nguyen confirmed m 49 2023-01-02 2023-01-02
11 20 Annie Carter probable f 7 2023-01-02 2023-01-02
12 22 Thomas Morales probable m 24 2023-01-02 2023-01-02
date_admission outcome date_outcome date_first_contact date_last_contact
1 2023-01-04 recovered <NA> <NA> <NA>
2 <NA> recovered <NA> 2022-12-30 2023-01-08
3 <NA> recovered <NA> 2022-12-31 2023-01-05
4 2023-01-05 recovered <NA> 2022-12-31 2023-01-04
5 2023-01-14 recovered <NA> 2022-12-29 2023-01-02
6 <NA> recovered <NA> 2022-12-28 2023-01-05
7 <NA> recovered <NA> 2022-12-30 2023-01-04
8 <NA> recovered <NA> 2022-12-28 2023-01-09
9 <NA> recovered <NA> 2022-12-29 2023-01-04
10 <NA> recovered <NA> 2022-12-29 2023-01-04
11 <NA> recovered <NA> 2022-12-31 2023-01-03
12 <NA> recovered <NA> 2022-12-27 2023-01-05
ct_value
1 NA
2 25.2
3 NA
4 25.7
5 NA
6 NA
7 NA
8 NA
9 26.1
10 22.7
11 NA
12 NA
$contacts
from to age sex date_first_contact
1 Wajdi al-Demian Durine Cobb 29 f 2022-12-30
2 Wajdi al-Demian Raaid el-Diab 78 m 2022-12-31
3 Durine Cobb Hope Arshad 22 f 2022-12-30
4 Durine Cobb Nickolas Nault 70 m 2022-12-31
5 Raaid el-Diab Shanta Holiday 28 f 2022-12-29
6 Raaid el-Diab Darian Guyon 37 f 2022-12-27
7 Raaid el-Diab Mackenzie Ahn 61 f 2022-12-28
8 Nickolas Nault Hee Kennedy 46 m 2022-12-28
9 Shanta Holiday Chandra Kilian 67 f 2022-12-29
10 Mackenzie Ahn Mubarak el-Vaziri 86 m 2022-12-30
11 Mackenzie Ahn Raakaan al-Shams 71 m 2022-12-28
12 Mackenzie Ahn Mikhaila Carlson 51 f 2022-12-29
13 Mubarak el-Vaziri Ricardo Sanchez 44 m 2022-12-28
14 Mubarak el-Vaziri Alexandra Johnson 49 f 2022-12-30
15 Mubarak el-Vaziri Kanani Nguyen 60 f 2022-12-30
16 Raakaan al-Shams Nirvana Elizalde Villa 56 f 2022-12-24
17 Mikhaila Carlson Tae Woo Nguyen 49 m 2022-12-29
18 Mikhaila Carlson Alexander Orio 50 m 2022-12-30
19 Mikhaila Carlson Annie Carter 7 f 2022-12-31
20 Mikhaila Carlson Jared Chambers 20 m 2022-12-29
21 Tae Woo Nguyen Thomas Morales 24 m 2022-12-27
date_last_contact was_case status
1 2023-01-08 Y case
2 2023-01-05 Y case
3 2023-01-03 N unknown
4 2023-01-04 Y case
5 2023-01-02 Y case
6 2023-01-01 N lost_to_followup
7 2023-01-05 Y case
8 2023-01-02 N lost_to_followup
9 2023-01-04 N unknown
10 2023-01-04 Y case
11 2023-01-09 Y case
12 2023-01-04 Y case
13 2023-01-04 N unknown
14 2023-01-02 N under_followup
15 2023-01-05 N under_followup
16 2023-01-04 N under_followup
17 2023-01-04 Y case
18 2023-01-03 N under_followup
19 2023-01-03 Y case
20 2023-01-04 N under_followup
21 2023-01-05 Y case
sim_outbreak works as expected with age structure
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death,
population_age = age_struct)
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Gabriel Black probable m 11 2023-01-01 2023-01-01
2 2 Taylor Graves confirmed f 10 2023-01-01 2023-01-01
3 3 Tyler Kelley suspected m 80 2023-01-01 2023-01-01
4 5 Cody Morales probable m 4 2023-01-01 2023-01-01
5 6 Cheyenne Sayavong confirmed f 84 2023-01-01 2023-01-01
6 8 Chantelle Vazquez-Luevano confirmed f 88 2023-01-01 2023-01-01
7 11 Rushdi al-Ishak confirmed m 71 2023-01-01 2023-01-01
8 12 Pierce Khanthavong suspected m 78 2023-01-01 2023-01-01
9 13 Megan Hayes confirmed f 28 2023-01-01 2023-01-01
10 18 Jackson Carlson confirmed m 51 2023-01-02 2023-01-02
11 20 Susana Varela probable f 75 2023-01-02 2023-01-02
12 22 Qaaid al-Madani probable m 48 2023-01-02 2023-01-02
date_admission outcome date_outcome date_first_contact date_last_contact
1 <NA> recovered <NA> <NA> <NA>
2 <NA> recovered <NA> 2022-12-30 2023-01-08
3 <NA> recovered <NA> 2022-12-31 2023-01-05
4 <NA> recovered <NA> 2022-12-31 2023-01-04
5 <NA> recovered <NA> 2022-12-29 2023-01-02
6 <NA> recovered <NA> 2022-12-28 2023-01-05
7 <NA> recovered <NA> 2022-12-30 2023-01-04
8 2023-01-04 recovered <NA> 2022-12-28 2023-01-09
9 <NA> recovered <NA> 2022-12-29 2023-01-04
10 <NA> recovered <NA> 2022-12-29 2023-01-04
11 2023-01-06 recovered <NA> 2022-12-31 2023-01-03
12 <NA> recovered <NA> 2022-12-27 2023-01-05
ct_value
1 NA
2 28.2
3 NA
4 NA
5 25.0
6 19.2
7 22.8
8 NA
9 28.1
10 23.0
11 NA
12 NA
$contacts
from to age sex
1 Gabriel Black Taylor Graves 10 f
2 Gabriel Black Tyler Kelley 80 m
3 Taylor Graves Carolyn Moore 19 f
4 Taylor Graves Cody Morales 4 m
5 Tyler Kelley Cheyenne Sayavong 84 f
6 Tyler Kelley Mercedes Lovelace 86 f
7 Tyler Kelley Chantelle Vazquez-Luevano 88 f
8 Cody Morales Joewid Le 79 m
9 Cheyenne Sayavong Kendra To 31 f
10 Chantelle Vazquez-Luevano Rushdi al-Ishak 71 m
11 Chantelle Vazquez-Luevano Pierce Khanthavong 78 m
12 Chantelle Vazquez-Luevano Megan Hayes 28 f
13 Rushdi al-Ishak Preston Barringer 1 m
14 Rushdi al-Ishak Amanda Larochelle 13 f
15 Rushdi al-Ishak Dominique Raymond 61 f
16 Pierce Khanthavong Natalie Newton 24 f
17 Megan Hayes Jackson Carlson 51 m
18 Megan Hayes Sam Spencer 73 m
19 Megan Hayes Susana Varela 75 f
20 Megan Hayes Bassaam el-Majid 25 m
21 Jackson Carlson Qaaid al-Madani 48 m
date_first_contact date_last_contact was_case status
1 2022-12-30 2023-01-08 Y case
2 2022-12-31 2023-01-05 Y case
3 2022-12-30 2023-01-03 N under_followup
4 2022-12-31 2023-01-04 Y case
5 2022-12-29 2023-01-02 Y case
6 2022-12-27 2023-01-01 N under_followup
7 2022-12-28 2023-01-05 Y case
8 2022-12-28 2023-01-02 N under_followup
9 2022-12-29 2023-01-04 N lost_to_followup
10 2022-12-30 2023-01-04 Y case
11 2022-12-28 2023-01-09 Y case
12 2022-12-29 2023-01-04 Y case
13 2022-12-28 2023-01-04 N under_followup
14 2022-12-30 2023-01-02 N under_followup
15 2022-12-30 2023-01-05 N under_followup
16 2022-12-24 2023-01-04 N under_followup
17 2022-12-29 2023-01-04 Y case
18 2022-12-30 2023-01-03 N under_followup
19 2022-12-31 2023-01-03 Y case
20 2022-12-29 2023-01-04 N under_followup
21 2022-12-27 2023-01-05 Y case
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simulist documentation built on April 12, 2025, 1:34 a.m.
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sim_outbreak works as expected with defaults
Code
sim_outbreak()
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Lolette Phillips suspected f 59 2023-01-01 2023-01-01
2 2 James Jack suspected m 90 2023-01-01 2023-01-01
3 3 Chen Kantha confirmed m 4 2023-01-02 2023-01-02
4 5 Saleema al-Zaki probable f 29 2023-01-04 2023-01-04
5 6 David Ponzio confirmed m 14 2023-01-05 2023-01-05
6 7 Christopher Ward probable m 85 2023-01-06 2023-01-06
7 10 Laura Ilaoa confirmed f 25 2023-01-13 2023-01-13
8 11 Morgan Mason suspected f 34 2023-01-11 2023-01-11
9 12 Cornelius Turner confirmed m 89 2023-01-13 2023-01-13
10 14 Shaddaad el-Younes suspected m 63 2023-01-11 2023-01-11
11 18 Carlo Ceazar Corpuz confirmed m 74 2023-01-14 2023-01-14
12 19 Bishr al-Qasim confirmed m 34 2023-01-12 2023-01-12
13 22 Nichole Mcfarland confirmed f 29 2023-01-12 2023-01-12
14 24 Jubair el-Aly confirmed m 46 2023-01-13 2023-01-13
15 27 Hafsa al-Massoud probable f 24 2023-01-14 2023-01-14
16 29 Trever Manis confirmed m 41 2023-01-21 2023-01-21
17 30 Maiya Vathanavarin suspected f 72 2023-01-19 2023-01-19
18 31 Ghaamid el-Zafar probable m 6 2023-01-20 2023-01-20
19 33 Kelly Runningbear-Paul confirmed f 61 2023-01-14 2023-01-14
20 34 James Welter probable m 44 2023-01-14 2023-01-14
21 35 Austin Manheimer confirmed m 71 2023-01-27 2023-01-27
22 38 Orville Stadelbauer confirmed m 69 2023-01-23 2023-01-23
23 39 Jennifer Ouk probable f 61 2023-01-23 2023-01-23
24 41 Nafeesa al-Zaher confirmed f 64 2023-01-24 2023-01-24
25 44 Nawwaara el-Pasha probable f 61 2023-01-22 2023-01-22
26 45 Saleet el-Mohammed probable m 66 2023-01-22 2023-01-22
27 47 Christian Mendoza probable m 81 2023-01-28 2023-01-28
28 50 Eraina Mcgee confirmed f 53 2023-01-28 2023-01-28
29 51 Mia Floyd probable f 45 2023-01-29 2023-01-29
30 53 Collin Chavez confirmed m 42 2023-02-02 2023-02-02
31 54 Itzel Gonzales confirmed f 78 2023-02-03 2023-02-03
32 55 Alexis Caramillo confirmed f 35 2023-01-24 2023-01-24
33 56 Ronnie Scurlock suspected m 54 2023-01-26 2023-01-26
34 58 Shane Ahmad confirmed m 68 2023-01-25 2023-01-25
35 59 Ghaaliya al-Shaheed probable f 3 2023-01-23 2023-01-23
36 60 Exzinia Smith probable f 44 2023-01-29 2023-01-29
37 63 Rhiannon Freeland probable f 62 2023-01-31 2023-01-31
38 64 Deisha Beckner confirmed f 35 2023-01-29 2023-01-29
39 65 Nelly Reyez confirmed f 90 2023-02-03 2023-02-03
40 66 Nadheera el-Mohiuddin probable f 25 2023-02-01 2023-02-01
41 71 Caroline Vargas Pena probable f 46 2023-01-29 2023-01-29
42 73 Mathurin Curtis confirmed m 8 2023-02-01 2023-02-01
43 77 Kevin Shahi confirmed m 63 2023-01-30 2023-01-30
44 78 Diksha Reichal suspected f 54 2023-01-29 2023-01-29
45 80 Jazmine Sturgeon probable f 67 2023-02-03 2023-02-03
46 85 Sally Richardson probable f 37 2023-02-02 2023-02-02
47 88 Laraena Batson confirmed f 73 2023-01-30 2023-01-30
48 89 Monica Ye probable f 13 2023-02-02 2023-02-02
49 90 Kashauna Yorks probable f 72 2023-02-01 2023-02-01
50 93 Carmelita Montoya probable f 61 2023-02-04 2023-02-04
51 97 Aliyya el-Yassin probable f 22 2023-02-05 2023-02-05
52 98 Alicia Vue confirmed f 29 2023-02-04 2023-02-04
53 101 Rashele Williams confirmed f 17 2023-02-07 2023-02-07
54 108 Isabella Medina probable f 71 2023-02-14 2023-02-14
55 111 Samuel Goodfellow confirmed m 90 2023-02-09 2023-02-09
56 113 Bertha Mohar probable f 23 2023-02-12 2023-02-12
57 114 Mu,Aawiya al-Kaba confirmed m 35 2023-02-16 2023-02-16
58 116 Andrew Garcia confirmed m 62 2023-02-24 2023-02-24
59 119 Trevor Colligan confirmed m 57 2023-02-23 2023-02-23
60 120 Taaj el-Sarah suspected m 44 2023-02-18 2023-02-18
61 122 Savannah Cohen confirmed f 57 2023-03-02 2023-03-02
62 123 Nawfa el-Anwar suspected f 63 2023-03-08 2023-03-08
63 125 Ryan Zheng suspected m 46 2023-02-28 2023-02-28
64 126 Henry Reichman suspected m 66 2023-02-26 2023-02-26
65 130 Shannon Armbrust probable f 68 2023-03-07 2023-03-07
66 131 Orilea Diego probable f 12 2023-03-09 2023-03-09
67 133 Kloe Avila confirmed f 51 2023-03-18 2023-03-18
68 138 Sarah Griffith confirmed f 2 2023-03-10 2023-03-10
69 139 Kara Finken probable f 53 2023-03-09 2023-03-09
70 142 Raul Aguirre Molina probable m 76 2023-03-23 2023-03-23
71 143 Mikayla Smith confirmed f 82 2023-03-21 2023-03-21
72 145 Mansoor al-Siddique confirmed m 25 2023-03-15 2023-03-15
73 146 Nizaam al-Salame suspected m 76 2023-03-13 2023-03-13
74 147 Alexis Harding confirmed f 14 2023-03-13 2023-03-13
75 150 Unique Vigil confirmed f 76 2023-03-11 2023-03-11
76 153 Tanya Mcadoo confirmed f 78 2023-03-15 2023-03-15
77 154 Shawn Morgan confirmed m 75 2023-03-24 2023-03-24
78 155 Asysa Robinson confirmed f 76 2023-03-24 2023-03-24
79 157 Sakeena al-Abdoo suspected f 80 2023-03-18 2023-03-18
80 158 Richard Prum confirmed m 41 2023-03-18 2023-03-18
81 159 Shahla al-Jaffer confirmed f 78 2023-03-19 2023-03-19
82 163 Kailey Braden suspected f 28 2023-03-15 2023-03-15
83 164 Raadiya el-Chahine confirmed f 2 2023-03-21 2023-03-21
84 166 Janie Santa Cruz probable f 82 2023-03-26 2023-03-26
85 171 Alvaro Romero probable m 5 2023-03-22 2023-03-22
86 172 Lane Rodriguez confirmed m 1 2023-03-20 2023-03-20
87 173 Ka Lee confirmed m 44 2023-03-19 2023-03-19
88 174 Qaaid al-Shaker suspected m 76 2023-03-16 2023-03-16
89 175 Munsif al-Ozer suspected m 3 2023-03-29 2023-03-29
90 176 Sharon Watson probable f 15 2023-03-25 2023-03-25
91 177 Danielle Ouellette confirmed f 19 2023-03-26 2023-03-26
92 178 Abdur Rasheed al-Salahuddin confirmed m 76 2023-03-25 2023-03-25
93 182 Samuel Videtzky confirmed m 90 2023-03-27 2023-03-27
94 186 Shalise Peters-Maloy confirmed f 64 2023-04-03 2023-04-03
95 189 Jay Herman confirmed m 35 2023-03-29 2023-03-29
96 195 Manaara el-Saba confirmed f 84 2023-03-27 2023-03-27
97 196 Amelia Gallegos confirmed f 18 2023-03-30 2023-03-30
98 197 Brieannah Coles suspected f 79 2023-03-28 2023-03-28
99 199 Sarah Vu suspected f 49 2023-04-07 2023-04-07
100 200 Mason Powells probable m 56 2023-04-05 2023-04-05
101 201 Ashley Dotson confirmed f 76 2023-04-07 2023-04-07
102 202 Abdul Ghafoor al-Firman confirmed m 41 2023-04-03 2023-04-03
103 205 Vincent Arnick suspected m 29 2023-04-01 2023-04-01
104 209 Razeen al-Sala suspected m 39 2023-04-05 2023-04-05
105 210 Rusty Figueroa confirmed m 32 2023-04-01 2023-04-01
106 211 Emma Jones suspected f 9 2023-04-06 2023-04-06
107 213 Cam Tu Quilon confirmed f 39 2023-04-11 2023-04-11
108 214 Fisayo Wallace confirmed m 12 2023-04-17 2023-04-17
109 219 Alejandra Purdham confirmed f 52 2023-04-10 2023-04-10
110 221 Yahya el-Aslam confirmed m 22 2023-04-02 2023-04-02
111 224 Nabeel el-Karam probable m 68 2023-04-08 2023-04-08
112 226 Sandra Rodriquez confirmed f 57 2023-04-06 2023-04-06
113 229 Ameen al-Shakir confirmed m 8 2023-04-12 2023-04-12
114 230 Azmi el-Safar confirmed m 28 2023-04-12 2023-04-12
115 232 Laaiqa el-Azizi suspected f 2 2023-04-02 2023-04-02
116 233 Jose Lopez confirmed m 84 2023-04-09 2023-04-09
117 234 Mreenal Solberg confirmed f 52 2023-04-09 2023-04-09
118 235 Kevin Behr confirmed m 58 2023-04-12 2023-04-12
119 236 Khyleah Jones suspected f 29 2023-04-10 2023-04-10
120 238 Quinn Barrett confirmed m 30 2023-04-14 2023-04-14
121 240 Bryanna Medrano confirmed f 71 2023-04-15 2023-04-15
122 243 Marques Rice suspected m 43 2023-04-13 2023-04-13
123 245 Andrew Zaragoza-Madrid confirmed m 40 2023-04-15 2023-04-15
124 250 Julanne El-Amin suspected f 46 2023-04-16 2023-04-16
125 251 Jason Sowards suspected m 69 2023-04-11 2023-04-11
126 252 Yeeleng Tran suspected m 69 2023-04-20 2023-04-20
127 253 Isaac Reid probable m 38 2023-04-20 2023-04-20
128 254 Lawrence Williams probable m 28 2023-04-16 2023-04-16
129 255 Adrian Anaya confirmed m 82 2023-04-16 2023-04-16
130 258 Colette Torres confirmed f 19 2023-04-14 2023-04-14
131 261 Jose Luna confirmed m 46 2023-04-26 2023-04-26
132 262 Ummu Kulthoom al-Ghaffari confirmed f 71 2023-04-13 2023-04-13
133 264 Luna Vigil confirmed f 4 2023-04-25 2023-04-25
134 265 Jasmine Evans confirmed f 31 2023-04-25 2023-04-25
135 267 Javon Jenkins probable m 16 2023-04-20 2023-04-20
136 268 Clifton Charron confirmed m 53 2023-04-21 2023-04-21
137 277 Zachary Stuart confirmed m 14 2023-05-01 2023-05-01
138 278 Naseer el-Javed confirmed m 48 2023-04-28 2023-04-28
139 279 Alexis Stafford confirmed f 89 2023-04-25 2023-04-25
140 280 Razeen el-Azad suspected m 39 2023-04-26 2023-04-26
141 282 Jordan Marshall probable f 20 2023-04-21 2023-04-21
142 284 Marcus Erman probable m 6 2023-05-03 2023-05-03
143 285 Ismad al-Badour probable m 28 2023-05-05 2023-05-05
144 291 Firdaus el-Farha suspected f 42 2023-05-01 2023-05-01
145 292 Jane David confirmed f 71 2023-04-23 2023-04-23
146 293 Corina Morales probable f 9 2023-05-05 2023-05-05
147 296 Justin Delori suspected m 61 2023-05-06 2023-05-06
148 298 Janalen Nguyen confirmed f 53 2023-05-02 2023-05-02
149 301 Naseera al-Arif confirmed f 76 2023-04-23 2023-04-23
150 302 Andrew Sun confirmed m 69 2023-04-26 2023-04-26
151 304 Ty Rains confirmed m 50 2023-05-07 2023-05-07
152 307 Javier Valdez probable m 7 2023-05-09 2023-05-09
153 310 Kyana Ludwig confirmed f 45 2023-04-24 2023-04-24
154 311 Jessie Berry confirmed f 83 2023-04-25 2023-04-25
155 313 Jazmyn Guyton confirmed f 41 2023-04-27 2023-04-27
156 316 Gia Garcia confirmed f 88 2023-05-10 2023-05-10
157 320 John Trujillo probable m 79 2023-05-01 2023-05-01
158 326 Haley Hamlin probable f 82 2023-05-08 2023-05-08
date_admission outcome date_outcome date_first_contact date_last_contact
1 2023-01-09 died 2023-01-13 <NA> <NA>
2 <NA> recovered <NA> 2022-12-29 2023-01-03
3 <NA> recovered <NA> 2022-12-28 2023-01-01
4 <NA> recovered <NA> 2022-12-28 2023-01-04
5 2023-01-09 died 2023-01-23 2022-12-31 2023-01-04
6 2023-01-08 recovered <NA> 2022-12-31 2023-01-06
7 <NA> recovered <NA> 2023-01-02 2023-01-07
8 2023-01-24 died 2023-01-27 2023-01-03 2023-01-07
9 <NA> recovered <NA> 2023-01-03 2023-01-11
10 <NA> recovered <NA> 2023-01-04 2023-01-09
11 <NA> recovered <NA> 2023-01-09 2023-01-17
12 <NA> recovered <NA> 2023-01-07 2023-01-14
13 <NA> recovered <NA> 2023-01-07 2023-01-17
14 <NA> recovered <NA> 2023-01-08 2023-01-15
15 2023-01-19 died 2023-01-27 2023-01-09 2023-01-16
16 <NA> recovered <NA> 2023-01-08 2023-01-14
17 <NA> recovered <NA> 2023-01-07 2023-01-13
18 <NA> recovered <NA> 2023-01-10 2023-01-16
19 <NA> recovered <NA> 2023-01-12 2023-01-15
20 2023-02-10 recovered <NA> 2023-01-12 2023-01-18
21 <NA> died 2023-02-05 2023-01-16 2023-01-21
22 <NA> recovered <NA> 2023-01-19 2023-01-23
23 <NA> recovered <NA> 2023-01-18 2023-01-24
24 <NA> recovered <NA> 2023-01-17 2023-01-21
25 <NA> recovered <NA> 2023-01-18 2023-01-21
26 <NA> recovered <NA> 2023-01-19 2023-01-25
27 <NA> recovered <NA> 2023-01-23 2023-01-28
28 2023-01-30 died 2023-02-16 2023-01-20 2023-01-28
29 <NA> recovered <NA> 2023-01-22 2023-01-25
30 2023-02-11 recovered <NA> 2023-01-20 2023-01-27
31 <NA> recovered <NA> 2023-01-23 2023-01-29
32 <NA> recovered <NA> 2023-01-17 2023-01-24
33 <NA> died 2023-02-14 2023-01-21 2023-01-26
34 2023-01-29 recovered <NA> 2023-01-17 2023-01-22
35 <NA> recovered <NA> 2023-01-15 2023-01-22
36 2023-02-02 died 2023-02-09 2023-01-20 2023-01-23
37 <NA> recovered <NA> 2023-01-27 2023-01-31
38 <NA> recovered <NA> 2023-01-26 2023-02-01
39 2023-02-08 died 2023-02-21 2023-01-28 2023-02-02
40 2023-02-05 recovered <NA> 2023-01-27 2023-01-30
41 <NA> recovered <NA> 2023-01-19 2023-01-28
42 <NA> died 2023-02-15 2023-01-25 2023-02-02
43 <NA> recovered <NA> 2023-01-26 2023-02-01
44 <NA> recovered <NA> 2023-01-26 2023-01-30
45 <NA> recovered <NA> 2023-01-31 2023-02-02
46 <NA> recovered <NA> 2023-01-30 2023-02-05
47 <NA> recovered <NA> 2023-01-28 2023-01-30
48 <NA> recovered <NA> 2023-01-24 2023-02-03
49 <NA> recovered <NA> 2023-01-28 2023-02-05
50 <NA> recovered <NA> 2023-02-03 2023-02-05
51 <NA> died 2023-02-14 2023-01-31 2023-02-04
52 <NA> died 2023-02-13 2023-01-27 2023-02-02
53 <NA> recovered <NA> 2023-01-28 2023-02-09
54 <NA> died 2023-02-28 2023-01-31 2023-02-10
55 <NA> recovered <NA> 2023-01-31 2023-02-05
56 <NA> recovered <NA> 2023-02-04 2023-02-08
57 <NA> recovered <NA> 2023-02-10 2023-02-17
58 <NA> recovered <NA> 2023-02-08 2023-02-13
59 <NA> recovered <NA> 2023-02-10 2023-02-12
60 <NA> recovered <NA> 2023-02-10 2023-02-16
61 <NA> recovered <NA> 2023-02-24 2023-03-01
62 2023-03-11 died 2023-03-25 2023-02-21 2023-02-26
63 <NA> recovered <NA> 2023-02-20 2023-02-26
64 <NA> recovered <NA> 2023-02-22 2023-02-26
65 <NA> recovered <NA> 2023-03-01 2023-03-07
66 <NA> recovered <NA> 2023-03-01 2023-03-04
67 <NA> recovered <NA> 2023-02-27 2023-03-13
68 <NA> recovered <NA> 2023-03-09 2023-03-11
69 2023-03-16 died 2023-03-22 2023-03-09 2023-03-13
70 <NA> recovered <NA> 2023-03-15 2023-03-20
71 <NA> recovered <NA> 2023-03-16 2023-03-23
72 <NA> recovered <NA> 2023-03-08 2023-03-15
73 <NA> recovered <NA> 2023-03-07 2023-03-14
74 2023-03-17 recovered <NA> 2023-03-09 2023-03-11
75 <NA> recovered <NA> 2023-03-03 2023-03-13
76 <NA> recovered <NA> 2023-03-11 2023-03-22
77 2023-03-31 recovered <NA> 2023-03-14 2023-03-19
78 <NA> recovered <NA> 2023-03-14 2023-03-16
79 <NA> recovered <NA> 2023-03-09 2023-03-18
80 <NA> recovered <NA> 2023-03-08 2023-03-16
81 <NA> recovered <NA> 2023-03-11 2023-03-18
82 <NA> recovered <NA> 2023-03-10 2023-03-18
83 <NA> recovered <NA> 2023-03-14 2023-03-19
84 <NA> recovered <NA> 2023-03-20 2023-03-26
85 <NA> recovered <NA> 2023-03-15 2023-03-19
86 <NA> recovered <NA> 2023-03-13 2023-03-20
87 2023-03-22 died 2023-04-03 2023-03-14 2023-03-16
88 <NA> recovered <NA> 2023-03-13 2023-03-15
89 <NA> recovered <NA> 2023-03-24 2023-03-28
90 <NA> recovered <NA> 2023-03-20 2023-03-27
91 <NA> recovered <NA> 2023-03-18 2023-03-23
92 <NA> recovered <NA> 2023-03-17 2023-03-23
93 <NA> recovered <NA> 2023-03-12 2023-03-21
94 <NA> died 2023-04-12 2023-03-23 2023-03-28
95 <NA> died 2023-04-20 2023-03-22 2023-03-30
96 <NA> recovered <NA> 2023-03-24 2023-03-27
97 2023-04-03 recovered <NA> 2023-03-22 2023-03-27
98 2023-04-03 recovered <NA> 2023-03-23 2023-04-01
99 <NA> recovered <NA> 2023-04-03 2023-04-06
100 <NA> recovered <NA> 2023-03-31 2023-04-07
101 2023-04-12 recovered <NA> 2023-04-01 2023-04-04
102 <NA> recovered <NA> 2023-03-26 2023-04-02
103 <NA> recovered <NA> 2023-03-24 2023-04-02
104 2023-04-12 recovered <NA> 2023-03-24 2023-04-01
105 <NA> recovered <NA> 2023-03-26 2023-04-03
106 <NA> recovered <NA> 2023-03-29 2023-03-31
107 2023-04-13 died 2023-04-14 2023-04-04 2023-04-10
108 2023-04-20 died 2023-04-28 2023-04-02 2023-04-05
109 <NA> recovered <NA> 2023-03-30 2023-04-07
110 <NA> recovered <NA> 2023-03-31 2023-04-03
111 <NA> died 2023-04-19 2023-04-02 2023-04-08
112 <NA> recovered <NA> 2023-03-31 2023-04-04
113 <NA> recovered <NA> 2023-04-09 2023-04-12
114 <NA> recovered <NA> 2023-04-06 2023-04-11
115 <NA> recovered <NA> 2023-04-01 2023-04-10
116 <NA> recovered <NA> 2023-04-02 2023-04-06
117 2023-04-13 died 2023-04-18 2023-04-03 2023-04-09
118 <NA> recovered <NA> 2023-04-06 2023-04-11
119 <NA> recovered <NA> 2023-04-03 2023-04-11
120 <NA> recovered <NA> 2023-04-09 2023-04-14
121 <NA> recovered <NA> 2023-03-30 2023-04-08
122 <NA> recovered <NA> 2023-04-02 2023-04-15
123 <NA> recovered <NA> 2023-04-08 2023-04-12
124 <NA> recovered <NA> 2023-04-09 2023-04-17
125 <NA> recovered <NA> 2023-04-09 2023-04-11
126 <NA> recovered <NA> 2023-04-08 2023-04-13
127 <NA> recovered <NA> 2023-04-06 2023-04-14
128 <NA> died 2023-04-25 2023-04-11 2023-04-15
129 <NA> recovered <NA> 2023-04-13 2023-04-19
130 <NA> recovered <NA> 2023-04-11 2023-04-20
131 <NA> recovered <NA> 2023-04-13 2023-04-21
132 2023-04-18 died 2023-05-02 2023-04-10 2023-04-20
133 2023-04-27 recovered <NA> 2023-04-14 2023-04-22
134 <NA> recovered <NA> 2023-04-15 2023-04-26
135 2023-04-24 recovered <NA> 2023-04-19 2023-04-27
136 2023-04-29 died 2023-05-05 2023-04-20 2023-04-23
137 <NA> recovered <NA> 2023-04-11 2023-04-14
138 2023-05-01 recovered <NA> 2023-04-23 2023-04-29
139 <NA> recovered <NA> 2023-04-15 2023-04-24
140 <NA> recovered <NA> 2023-04-16 2023-04-24
141 2023-04-26 recovered <NA> 2023-04-16 2023-04-22
142 <NA> recovered <NA> 2023-04-28 2023-05-01
143 <NA> recovered <NA> 2023-04-23 2023-05-01
144 <NA> recovered <NA> 2023-04-19 2023-04-23
145 <NA> recovered <NA> 2023-04-16 2023-04-22
146 <NA> recovered <NA> 2023-04-29 2023-05-09
147 <NA> recovered <NA> 2023-05-03 2023-05-07
148 <NA> recovered <NA> 2023-04-25 2023-05-05
149 <NA> recovered <NA> 2023-04-19 2023-05-02
150 <NA> recovered <NA> 2023-04-18 2023-04-25
151 2023-05-11 recovered <NA> 2023-05-01 2023-05-07
152 <NA> recovered <NA> 2023-04-25 2023-05-06
153 <NA> recovered <NA> 2023-04-19 2023-04-26
154 <NA> recovered <NA> 2023-04-20 2023-04-27
155 <NA> recovered <NA> 2023-04-25 2023-04-30
156 <NA> recovered <NA> 2023-05-05 2023-05-10
157 <NA> recovered <NA> 2023-04-22 2023-04-28
158 2023-05-21 died 2023-05-22 2023-04-27 2023-05-03
ct_value
1 NA
2 NA
3 24.8
4 NA
5 24.6
6 NA
7 26.5
8 NA
9 24.7
10 NA
11 24.5
12 21.7
13 21.5
14 24.2
15 NA
16 23.1
17 NA
18 NA
19 21.5
20 NA
21 21.5
22 26.4
23 NA
24 25.2
25 NA
26 NA
27 NA
28 25.8
29 NA
30 21.7
31 23.7
32 24.8
33 NA
34 23.6
35 NA
36 NA
37 NA
38 25.3
39 23.9
40 NA
41 NA
42 27.8
43 26.1
44 NA
45 NA
46 NA
47 24.3
48 NA
49 NA
50 NA
51 NA
52 25.9
53 24.2
54 NA
55 27.1
56 NA
57 27.1
58 24.3
59 24.5
60 NA
61 30.3
62 NA
63 NA
64 NA
65 NA
66 NA
67 25.2
68 23.0
69 NA
70 NA
71 25.7
72 25.1
73 NA
74 20.0
75 25.7
76 27.2
77 24.2
78 27.5
79 NA
80 25.3
81 27.2
82 NA
83 24.9
84 NA
85 NA
86 25.2
87 24.0
88 NA
89 NA
90 NA
91 26.8
92 24.2
93 29.1
94 24.1
95 23.7
96 23.4
97 25.2
98 NA
99 NA
100 NA
101 26.7
102 27.8
103 NA
104 NA
105 26.4
106 NA
107 20.5
108 26.4
109 28.1
110 25.6
111 NA
112 18.6
113 25.9
114 23.8
115 NA
116 24.9
117 23.2
118 24.0
119 NA
120 25.3
121 22.3
122 NA
123 25.3
124 NA
125 NA
126 NA
127 NA
128 NA
129 23.9
130 25.8
131 22.5
132 27.2
133 25.1
134 18.6
135 NA
136 23.1
137 24.6
138 25.7
139 26.2
140 NA
141 NA
142 NA
143 NA
144 NA
145 28.1
146 NA
147 NA
148 23.7
149 26.7
150 22.0
151 24.2
152 NA
153 23.7
154 25.4
155 22.5
156 29.0
157 NA
158 NA
$contacts
from to age sex
1 Lolette Phillips James Jack 90 m
2 Lolette Phillips Chen Kantha 4 m
3 James Jack Anisa Wilkins 86 f
4 James Jack Saleema al-Zaki 29 f
5 Chen Kantha David Ponzio 14 m
6 Chen Kantha Christopher Ward 85 m
7 Chen Kantha Yutitham Moua 18 m
8 Saleema al-Zaki Crystal Estrada-Chavez 59 f
9 David Ponzio Laura Ilaoa 25 f
10 David Ponzio Morgan Mason 34 f
11 David Ponzio Cornelius Turner 89 m
12 David Ponzio Desmond Angel 5 m
13 Christopher Ward Shaddaad el-Younes 63 m
14 Morgan Mason Jameela al-Arshad 50 f
15 Morgan Mason Junaid el-Zaman 5 m
16 Morgan Mason Sameeha el-Ally 89 f
17 Cornelius Turner Carlo Ceazar Corpuz 74 m
18 Shaddaad el-Younes Bishr al-Qasim 34 m
19 Shaddaad el-Younes Sade Smith 47 f
20 Shaddaad el-Younes Edward Estrella 85 m
21 Shaddaad el-Younes Nichole Mcfarland 29 f
22 Carlo Ceazar Corpuz Aabdeen al-Hoque 24 m
23 Bishr al-Qasim Jubair el-Aly 46 m
24 Bishr al-Qasim Dalicia O'Donnell 63 f
25 Bishr al-Qasim Abdul Jaleel al-Amara 19 m
26 Bishr al-Qasim Hafsa al-Massoud 24 f
27 Nichole Mcfarland Qamraaa al-Rahim 9 f
28 Nichole Mcfarland Trever Manis 41 m
29 Nichole Mcfarland Maiya Vathanavarin 72 f
30 Nichole Mcfarland Ghaamid el-Zafar 6 m
31 Jubair el-Aly Nimesha Grossaint 9 f
32 Hafsa al-Massoud Kelly Runningbear-Paul 61 f
33 Hafsa al-Massoud James Welter 44 m
34 Trever Manis Austin Manheimer 71 m
35 Trever Manis Marco Martinez 34 m
36 Trever Manis Utkarsh Strausburg 75 m
37 Trever Manis Orville Stadelbauer 69 m
38 Trever Manis Jennifer Ouk 61 f
39 Trever Manis Amanda Cooper 67 f
40 Maiya Vathanavarin Nafeesa al-Zaher 64 f
41 Maiya Vathanavarin Sulaimaan al-Shabazz 11 m
42 Maiya Vathanavarin Savanna Gonzalez-Sanchez 59 f
43 Ghaamid el-Zafar Nawwaara el-Pasha 61 f
44 Ghaamid el-Zafar Saleet el-Mohammed 66 m
45 James Welter Shuaib al-Farooq 16 m
46 Austin Manheimer Christian Mendoza 81 m
47 Austin Manheimer Alexander Rivera 88 m
48 Jennifer Ouk Jameel Mosher 53 m
49 Jennifer Ouk Eraina Mcgee 53 f
50 Nafeesa al-Zaher Mia Floyd 45 f
51 Nafeesa al-Zaher Khongmong Hammond 42 m
52 Nafeesa al-Zaher Collin Chavez 42 m
53 Nafeesa al-Zaher Itzel Gonzales 78 f
54 Nawwaara el-Pasha Alexis Caramillo 35 f
55 Nawwaara el-Pasha Ronnie Scurlock 54 m
56 Nawwaara el-Pasha Brandon Maryland 54 m
57 Saleet el-Mohammed Shane Ahmad 68 m
58 Saleet el-Mohammed Ghaaliya al-Shaheed 3 f
59 Saleet el-Mohammed Exzinia Smith 44 f
60 Christian Mendoza Jamaal el-Shehadeh 35 m
61 Eraina Mcgee Joshua Nava Quiroz 23 m
62 Eraina Mcgee Rhiannon Freeland 62 f
63 Eraina Mcgee Deisha Beckner 35 f
64 Mia Floyd Nelly Reyez 90 f
65 Mia Floyd Nadheera el-Mohiuddin 25 f
66 Itzel Gonzales Renae Joyce 41 f
67 Ronnie Scurlock Cairra Trammell 17 m
68 Ronnie Scurlock Nakrista Ramirez-Solis 26 f
69 Shane Ahmad Madelyn Mckinney 61 f
70 Shane Ahmad Caroline Vargas Pena 46 f
71 Ghaaliya al-Shaheed Whitney Kim 57 f
72 Exzinia Smith Mathurin Curtis 8 m
73 Exzinia Smith Hissa al-Hammad 11 f
74 Rhiannon Freeland Yuvorn Huang 56 m
75 Deisha Beckner Chandel Duling 32 f
76 Deisha Beckner Kevin Shahi 63 m
77 Deisha Beckner Diksha Reichal 54 f
78 Deisha Beckner Yusuf Cha 22 m
79 Nadheera el-Mohiuddin Jazmine Sturgeon 67 f
80 Nadheera el-Mohiuddin Afaaf al-Azzi 83 f
81 Nadheera el-Mohiuddin Medhavi Nguyen 16 f
82 Nadheera el-Mohiuddin Russell Lathrop 38 m
83 Caroline Vargas Pena Kimiko Thompson 19 f
84 Mathurin Curtis Sally Richardson 37 f
85 Mathurin Curtis Markese Labadie 46 m
86 Mathurin Curtis Christian Maldonado 64 m
87 Kevin Shahi Laraena Batson 73 f
88 Kevin Shahi Monica Ye 13 f
89 Diksha Reichal Kashauna Yorks 72 f
90 Diksha Reichal Mark Miller 12 m
91 Jazmine Sturgeon Taylor Lange 52 f
92 Jazmine Sturgeon Carmelita Montoya 61 f
93 Jazmine Sturgeon Gloria Johnson 9 f
94 Jazmine Sturgeon Alexander Roy 9 m
95 Jazmine Sturgeon Habeeba el-Ahmad 42 f
96 Sally Richardson Aliyya el-Yassin 22 f
97 Laraena Batson Alicia Vue 29 f
98 Monica Ye Micah La 15 m
99 Monica Ye Cassandra Lor 69 f
100 Monica Ye Rashele Williams 17 f
101 Monica Ye Deviny Mcdonald 21 f
102 Monica Ye Daniel San 54 m
103 Monica Ye Shamari Bean 20 f
104 Monica Ye De'Chelle Norman 9 f
105 Carmelita Montoya Connor Bailey 26 m
106 Carmelita Montoya Lafaith Hopkins 80 f
107 Carmelita Montoya Isabella Medina 71 f
108 Carmelita Montoya Lauren Etsitty 57 f
109 Carmelita Montoya Shelby Tinoco 77 f
110 Alicia Vue Samuel Goodfellow 90 m
111 Rashele Williams Sapphire Bison 58 f
112 Rashele Williams Bertha Mohar 23 f
113 Isabella Medina Mu,Aawiya al-Kaba 35 m
114 Samuel Goodfellow Joshua Johnson 66 m
115 Bertha Mohar Andrew Garcia 62 m
116 Bertha Mohar Jennifer Silva 62 f
117 Bertha Mohar Megan Begay 34 f
118 Bertha Mohar Trevor Colligan 57 m
119 Mu,Aawiya al-Kaba Taaj el-Sarah 44 m
120 Mu,Aawiya al-Kaba Wen Kang Khan 22 m
121 Andrew Garcia Savannah Cohen 57 f
122 Andrew Garcia Nawfa el-Anwar 63 f
123 Trevor Colligan Yusri al-Amiri 7 m
124 Trevor Colligan Ryan Zheng 46 m
125 Trevor Colligan Henry Reichman 66 m
126 Taaj el-Sarah Sidqi al-Rahimi 4 m
127 Taaj el-Sarah Mastoor al-Imam 10 m
128 Savannah Cohen Muhaajir el-Reza 68 m
129 Savannah Cohen Shannon Armbrust 68 f
130 Savannah Cohen Orilea Diego 12 f
131 Nawfa el-Anwar Jez-Mas Marchman 51 m
132 Nawfa el-Anwar Kloe Avila 51 f
133 Ryan Zheng Weston Feuerstein 8 m
134 Henry Reichman Rebekah Jones Jr 55 f
135 Shannon Armbrust Madison Osse 77 f
136 Shannon Armbrust Merrill Jr Woods 22 m
137 Orilea Diego Sarah Griffith 2 f
138 Orilea Diego Kara Finken 53 f
139 Kloe Avila Elyse Tran 31 f
140 Kloe Avila Jumail al-Murad 77 m
141 Kloe Avila Raul Aguirre Molina 76 m
142 Kloe Avila Mikayla Smith 82 f
143 Kloe Avila Marissa Tollivoro 12 f
144 Sarah Griffith Mansoor al-Siddique 25 m
145 Sarah Griffith Nizaam al-Salame 76 m
146 Kara Finken Alexis Harding 14 f
147 Kara Finken Amanda Scharnell 31 f
148 Kara Finken Jaesung Fukuda 90 m
149 Kara Finken Unique Vigil 76 f
150 Raul Aguirre Molina Aldo Rodriguez-Ruiz 30 m
151 Mikayla Smith Rosemary Thammarath 32 f
152 Mansoor al-Siddique Tanya Mcadoo 78 f
153 Mansoor al-Siddique Shawn Morgan 75 m
154 Mansoor al-Siddique Asysa Robinson 76 f
155 Nizaam al-Salame Najlaa al-Salam 88 f
156 Alexis Harding Sakeena al-Abdoo 80 f
157 Alexis Harding Richard Prum 41 m
158 Alexis Harding Shahla al-Jaffer 78 f
159 Alexis Harding Jaycee Baker 11 m
160 Alexis Harding Rida al-Hussein 57 m
161 Unique Vigil Deliah Vannice 79 f
162 Tanya Mcadoo Kailey Braden 28 f
163 Tanya Mcadoo Raadiya el-Chahine 2 f
164 Shawn Morgan Payton Dodd 16 f
165 Asysa Robinson Janie Santa Cruz 82 f
166 Sakeena al-Abdoo Maritza Winkler 51 f
167 Sakeena al-Abdoo Shabeeba al-Jafari 54 f
168 Richard Prum Keeman Naylor 76 m
169 Richard Prum Yesenia Alexander 56 f
170 Richard Prum Alvaro Romero 5 m
171 Shahla al-Jaffer Lane Rodriguez 1 m
172 Kailey Braden Ka Lee 44 m
173 Kailey Braden Qaaid al-Shaker 76 m
174 Janie Santa Cruz Munsif al-Ozer 3 m
175 Alvaro Romero Sharon Watson 15 f
176 Alvaro Romero Danielle Ouellette 19 f
177 Alvaro Romero Abdur Rasheed al-Salahuddin 76 m
178 Lane Rodriguez Trevor Hahs 12 m
179 Qaaid al-Shaker Abdul Kareem el-Salem 43 m
180 Qaaid al-Shaker Sharaf al-Akbari 9 m
181 Qaaid al-Shaker Samuel Videtzky 90 m
182 Qaaid al-Shaker Fikra el-Bilal 7 f
183 Munsif al-Ozer Jeremy Stockinger 15 m
184 Munsif al-Ozer Raul Chavez 54 m
185 Danielle Ouellette Shalise Peters-Maloy 64 f
186 Danielle Ouellette Lizbeth Herrera 21 f
187 Danielle Ouellette Yael Pruitt 37 f
188 Danielle Ouellette Jay Herman 35 m
189 Danielle Ouellette Nadheera al-Farrah 70 f
190 Abdur Rasheed al-Salahuddin Jason Ahsan 70 m
191 Abdur Rasheed al-Salahuddin Grant Jiron 59 m
192 Abdur Rasheed al-Salahuddin Brittany Myers 77 f
193 Abdur Rasheed al-Salahuddin Tracy Conners 75 m
194 Abdur Rasheed al-Salahuddin Manaara el-Saba 84 f
195 Samuel Videtzky Amelia Gallegos 18 f
196 Samuel Videtzky Brieannah Coles 79 f
197 Shalise Peters-Maloy T'Koia Waddles 14 f
198 Shalise Peters-Maloy Sarah Vu 49 f
199 Shalise Peters-Maloy Mason Powells 56 m
200 Shalise Peters-Maloy Ashley Dotson 76 f
201 Jay Herman Abdul Ghafoor al-Firman 41 m
202 Jay Herman Chasity Suetos 16 f
203 Jay Herman Tyler Vigil 3 m
204 Manaara el-Saba Vincent Arnick 29 m
205 Manaara el-Saba Billye Dalrymple 89 f
206 Manaara el-Saba Devundrick Mcgrier 24 m
207 Manaara el-Saba Damian Sotelo 31 m
208 Amelia Gallegos Razeen al-Sala 39 m
209 Amelia Gallegos Rusty Figueroa 32 m
210 Amelia Gallegos Emma Jones 9 f
211 Brieannah Coles Randall Asad 82 m
212 Sarah Vu Cam Tu Quilon 39 f
213 Mason Powells Fisayo Wallace 12 m
214 Ashley Dotson Bianca Gaytan 54 f
215 Ashley Dotson Bao-Tran Hasegawa 68 f
216 Abdul Ghafoor al-Firman Antonio John III 73 m
217 Abdul Ghafoor al-Firman Jacob Helfer 85 m
218 Abdul Ghafoor al-Firman Alejandra Purdham 52 f
219 Abdul Ghafoor al-Firman Frankie Armstrong 3 f
220 Vincent Arnick Yahya el-Aslam 22 m
221 Vincent Arnick Katherine Redhorse 5 f
222 Razeen al-Sala Oscar Mora 66 m
223 Razeen al-Sala Nabeel el-Karam 68 m
224 Rusty Figueroa Kamaaluddeen al-Saidi 38 m
225 Rusty Figueroa Sandra Rodriquez 57 f
226 Rusty Figueroa Joshua Henzler 48 m
227 Emma Jones Julisa Cortez 75 f
228 Cam Tu Quilon Ameen al-Shakir 8 m
229 Alejandra Purdham Azmi el-Safar 28 m
230 Alejandra Purdham Khampane Kazemi 21 m
231 Yahya el-Aslam Laaiqa el-Azizi 2 f
232 Yahya el-Aslam Jose Lopez 84 m
233 Nabeel el-Karam Mreenal Solberg 52 f
234 Nabeel el-Karam Kevin Behr 58 m
235 Nabeel el-Karam Khyleah Jones 29 f
236 Sandra Rodriquez Eliora Baldwin 7 f
237 Ameen al-Shakir Quinn Barrett 30 m
238 Ameen al-Shakir Gina Mcmaster 11 f
239 Laaiqa el-Azizi Bryanna Medrano 71 f
240 Laaiqa el-Azizi Alex Salaz 50 m
241 Jose Lopez Abeer el-Kazi 77 f
242 Jose Lopez Marques Rice 43 m
243 Jose Lopez Haakima el-Kanan 19 f
244 Jose Lopez Andrew Zaragoza-Madrid 40 m
245 Jose Lopez Alec Cross 49 m
246 Jose Lopez Braxton Lefholz 11 m
247 Jose Lopez Richard Miller 15 m
248 Jose Lopez Roy Coleman 61 m
249 Khyleah Jones Julanne El-Amin 46 f
250 Khyleah Jones Jason Sowards 69 m
251 Khyleah Jones Yeeleng Tran 69 m
252 Khyleah Jones Isaac Reid 38 m
253 Quinn Barrett Lawrence Williams 28 m
254 Quinn Barrett Adrian Anaya 82 m
255 Bryanna Medrano Amanda Wilson 45 f
256 Bryanna Medrano Azza el-Husain 47 f
257 Marques Rice Colette Torres 19 f
258 Andrew Zaragoza-Madrid Kamaaluddeen al-Semaan 85 m
259 Julanne El-Amin Esmeralda Escobar 24 f
260 Julanne El-Amin Jose Luna 46 m
261 Jason Sowards Ummu Kulthoom al-Ghaffari 71 f
262 Jason Sowards Samuel Mcclaskey 69 m
263 Yeeleng Tran Luna Vigil 4 f
264 Yeeleng Tran Jasmine Evans 31 f
265 Isaac Reid Gericko Griego 18 m
266 Isaac Reid Javon Jenkins 16 m
267 Isaac Reid Clifton Charron 53 m
268 Lawrence Williams Ashley Allen 62 f
269 Lawrence Williams Saeed el-Abdallah 87 m
270 Adrian Anaya Yeun Jung Khanom 28 f
271 Adrian Anaya Jazmine Berry 42 f
272 Colette Torres Tyree Reeves 42 m
273 Jose Luna Cuauhtemoc Martinez 84 m
274 Jose Luna Tawheed al-Noorani 29 m
275 Ummu Kulthoom al-Ghaffari Zuhaira al-Mohamed 47 f
276 Ummu Kulthoom al-Ghaffari Zachary Stuart 14 m
277 Luna Vigil Naseer el-Javed 48 m
278 Javon Jenkins Alexis Stafford 89 f
279 Javon Jenkins Razeen el-Azad 39 m
280 Javon Jenkins Kaylee Valverde 17 f
281 Clifton Charron Jordan Marshall 20 f
282 Clifton Charron Marissa Iron Cloud-Gresko 61 f
283 Zachary Stuart Marcus Erman 6 m
284 Naseer el-Javed Ismad al-Badour 28 m
285 Alexis Stafford Colin Moreno 83 m
286 Alexis Stafford Lydia Major 68 f
287 Alexis Stafford Fidda el-Satter 47 f
288 Jordan Marshall Daifallah al-Shaer 73 m
289 Jordan Marshall Farhat al-Masih 24 f
290 Jordan Marshall Firdaus el-Farha 42 f
291 Jordan Marshall Jane David 71 f
292 Marcus Erman Corina Morales 9 f
293 Marcus Erman Alexandra Lucero 78 f
294 Ismad al-Badour Raabia el-Saidi 24 f
295 Ismad al-Badour Justin Delori 61 m
296 Firdaus el-Farha Lael Holguin 49 f
297 Firdaus el-Farha Janalen Nguyen 53 f
298 Firdaus el-Farha Sanaaa el-Mohamed 63 f
299 Jane David Judy Ahuna 29 f
300 Jane David Naseera al-Arif 76 f
301 Jane David Andrew Sun 69 m
302 Corina Morales Bailey Walker 63 f
303 Corina Morales Ty Rains 50 m
304 Corina Morales Maribel Rangel 58 f
305 Janalen Nguyen Logan Major 88 m
306 Janalen Nguyen Javier Valdez 7 m
307 Janalen Nguyen Jennifer Mallot 51 f
308 Naseera al-Arif Richard Kelemeni 47 m
309 Naseera al-Arif Kyana Ludwig 45 f
310 Naseera al-Arif Jessie Berry 83 f
311 Naseera al-Arif Luis Ellis 30 m
312 Andrew Sun Jazmyn Guyton 41 f
313 Ty Rains Asiah Sheppard 15 f
314 Ty Rains Katryna Stevens 27 f
315 Ty Rains Gia Garcia 88 f
316 Javier Valdez Hannah Wright 74 f
317 Kyana Ludwig Ryan Gutierrez 1 m
318 Kyana Ludwig Autumn Perez-Lozano 84 f
319 Jessie Berry John Trujillo 79 m
320 Jazmyn Guyton Azzaam al-Azad 54 m
321 Jazmyn Guyton Saafiyya el-Idris 24 f
322 Jazmyn Guyton Nicholas Taylor 37 m
323 Gia Garcia Mujahid el-Zaman 3 m
324 Gia Garcia Stephanie Vincelet 48 f
325 John Trujillo Haley Hamlin 82 f
326 Haley Hamlin Larissa Herrera 30 f
date_first_contact date_last_contact was_case status
1 2022-12-29 2023-01-03 Y case
2 2022-12-28 2023-01-01 Y case
3 2022-12-26 2023-01-02 N lost_to_followup
4 2022-12-28 2023-01-04 Y case
5 2022-12-31 2023-01-04 Y case
6 2022-12-31 2023-01-06 Y case
7 2023-01-01 2023-01-02 N under_followup
8 2023-01-03 2023-01-09 N under_followup
9 2023-01-02 2023-01-07 Y case
10 2023-01-03 2023-01-07 Y case
11 2023-01-03 2023-01-11 Y case
12 2022-12-30 2023-01-08 N under_followup
13 2023-01-04 2023-01-09 Y case
14 2023-01-09 2023-01-17 N under_followup
15 2023-01-07 2023-01-16 N under_followup
16 2023-01-11 2023-01-13 N under_followup
17 2023-01-09 2023-01-17 Y case
18 2023-01-07 2023-01-14 Y case
19 2023-01-08 2023-01-13 N under_followup
20 2023-01-09 2023-01-15 N under_followup
21 2023-01-07 2023-01-17 Y case
22 2023-01-12 2023-01-16 N under_followup
23 2023-01-08 2023-01-15 Y case
24 2023-01-11 2023-01-14 N under_followup
25 2023-01-08 2023-01-13 N lost_to_followup
26 2023-01-09 2023-01-16 Y case
27 2023-01-07 2023-01-15 N under_followup
28 2023-01-08 2023-01-14 Y case
29 2023-01-07 2023-01-13 Y case
30 2023-01-10 2023-01-16 Y case
31 2023-01-10 2023-01-17 N under_followup
32 2023-01-12 2023-01-15 Y case
33 2023-01-12 2023-01-18 Y case
34 2023-01-16 2023-01-21 Y case
35 2023-01-20 2023-01-23 N lost_to_followup
36 2023-01-19 2023-01-25 N lost_to_followup
37 2023-01-19 2023-01-23 Y case
38 2023-01-18 2023-01-24 Y case
39 2023-01-20 2023-01-26 N lost_to_followup
40 2023-01-17 2023-01-21 Y case
41 2023-01-15 2023-01-20 N under_followup
42 2023-01-14 2023-01-21 N under_followup
43 2023-01-18 2023-01-21 Y case
44 2023-01-19 2023-01-25 Y case
45 2023-01-12 2023-01-18 N under_followup
46 2023-01-23 2023-01-28 Y case
47 2023-01-26 2023-01-29 N under_followup
48 2023-01-19 2023-01-28 N lost_to_followup
49 2023-01-20 2023-01-28 Y case
50 2023-01-22 2023-01-25 Y case
51 2023-01-22 2023-01-26 N under_followup
52 2023-01-20 2023-01-27 Y case
53 2023-01-23 2023-01-29 Y case
54 2023-01-17 2023-01-24 Y case
55 2023-01-21 2023-01-26 Y case
56 2023-01-18 2023-01-26 N under_followup
57 2023-01-17 2023-01-22 Y case
58 2023-01-15 2023-01-22 Y case
59 2023-01-20 2023-01-23 Y case
60 2023-01-28 2023-01-30 N under_followup
61 2023-01-26 2023-02-02 N unknown
62 2023-01-27 2023-01-31 Y case
63 2023-01-26 2023-02-01 Y case
64 2023-01-28 2023-02-02 Y case
65 2023-01-27 2023-01-30 Y case
66 2023-01-31 2023-02-08 N under_followup
67 2023-01-24 2023-01-27 N under_followup
68 2023-01-20 2023-01-27 N lost_to_followup
69 2023-01-23 2023-01-30 N under_followup
70 2023-01-19 2023-01-28 Y case
71 2023-01-21 2023-01-25 N lost_to_followup
72 2023-01-25 2023-02-02 Y case
73 2023-01-28 2023-02-04 N lost_to_followup
74 2023-01-27 2023-02-05 N under_followup
75 2023-01-25 2023-02-04 N under_followup
76 2023-01-26 2023-02-01 Y case
77 2023-01-26 2023-01-30 Y case
78 2023-01-25 2023-02-03 N lost_to_followup
79 2023-01-31 2023-02-02 Y case
80 2023-01-29 2023-02-04 N under_followup
81 2023-01-28 2023-02-02 N under_followup
82 2023-01-30 2023-02-03 N under_followup
83 2023-01-29 2023-02-02 N under_followup
84 2023-01-30 2023-02-05 Y case
85 2023-01-30 2023-02-02 N under_followup
86 2023-01-29 2023-02-04 N unknown
87 2023-01-28 2023-01-30 Y case
88 2023-01-24 2023-02-03 Y case
89 2023-01-28 2023-02-05 Y case
90 2023-01-28 2023-02-03 N under_followup
91 2023-01-31 2023-02-08 N unknown
92 2023-02-03 2023-02-05 Y case
93 2023-02-02 2023-02-07 N under_followup
94 2023-01-30 2023-02-05 N lost_to_followup
95 2023-01-28 2023-02-05 N under_followup
96 2023-01-31 2023-02-04 Y case
97 2023-01-27 2023-02-02 Y case
98 2023-01-31 2023-02-07 N under_followup
99 2023-01-27 2023-02-06 N under_followup
100 2023-01-28 2023-02-09 Y case
101 2023-01-29 2023-02-03 N under_followup
102 2023-01-31 2023-02-07 N lost_to_followup
103 2023-02-02 2023-02-05 N under_followup
104 2023-01-31 2023-02-07 N under_followup
105 2023-01-31 2023-02-07 N under_followup
106 2023-01-29 2023-02-10 N under_followup
107 2023-01-31 2023-02-10 Y case
108 2023-01-31 2023-02-06 N under_followup
109 2023-01-30 2023-02-08 N under_followup
110 2023-01-31 2023-02-05 Y case
111 2023-02-02 2023-02-12 N under_followup
112 2023-02-04 2023-02-08 Y case
113 2023-02-10 2023-02-17 Y case
114 2023-02-08 2023-02-12 N lost_to_followup
115 2023-02-08 2023-02-13 Y case
116 2023-02-11 2023-02-15 N under_followup
117 2023-02-10 2023-02-14 N under_followup
118 2023-02-10 2023-02-12 Y case
119 2023-02-10 2023-02-16 Y case
120 2023-02-09 2023-02-21 N under_followup
121 2023-02-24 2023-03-01 Y case
122 2023-02-21 2023-02-26 Y case
123 2023-02-23 2023-03-01 N lost_to_followup
124 2023-02-20 2023-02-26 Y case
125 2023-02-22 2023-02-26 Y case
126 2023-02-15 2023-02-22 N unknown
127 2023-02-13 2023-02-19 N under_followup
128 2023-02-28 2023-03-03 N under_followup
129 2023-03-01 2023-03-07 Y case
130 2023-03-01 2023-03-04 Y case
131 2023-03-06 2023-03-11 N under_followup
132 2023-02-27 2023-03-13 Y case
133 2023-02-25 2023-03-02 N under_followup
134 2023-02-24 2023-03-05 N under_followup
135 2023-03-05 2023-03-12 N under_followup
136 2023-03-05 2023-03-11 N under_followup
137 2023-03-09 2023-03-11 Y case
138 2023-03-09 2023-03-13 Y case
139 2023-03-13 2023-03-23 N lost_to_followup
140 2023-03-16 2023-03-18 N lost_to_followup
141 2023-03-15 2023-03-20 Y case
142 2023-03-16 2023-03-23 Y case
143 2023-03-14 2023-03-22 N under_followup
144 2023-03-08 2023-03-15 Y case
145 2023-03-07 2023-03-14 Y case
146 2023-03-09 2023-03-11 Y case
147 2023-03-07 2023-03-10 N under_followup
148 2023-03-03 2023-03-12 N unknown
149 2023-03-03 2023-03-13 Y case
150 2023-03-17 2023-03-28 N under_followup
151 2023-03-17 2023-03-24 N under_followup
152 2023-03-11 2023-03-22 Y case
153 2023-03-14 2023-03-19 Y case
154 2023-03-14 2023-03-16 Y case
155 2023-03-12 2023-03-15 N under_followup
156 2023-03-09 2023-03-18 Y case
157 2023-03-08 2023-03-16 Y case
158 2023-03-11 2023-03-18 Y case
159 2023-03-12 2023-03-19 N under_followup
160 2023-03-11 2023-03-18 N under_followup
161 2023-03-08 2023-03-14 N under_followup
162 2023-03-10 2023-03-18 Y case
163 2023-03-14 2023-03-19 Y case
164 2023-03-23 2023-03-27 N lost_to_followup
165 2023-03-20 2023-03-26 Y case
166 2023-03-16 2023-03-21 N under_followup
167 2023-03-14 2023-03-19 N under_followup
168 2023-03-16 2023-03-22 N under_followup
169 2023-03-16 2023-03-21 N under_followup
170 2023-03-15 2023-03-19 Y case
171 2023-03-13 2023-03-20 Y case
172 2023-03-14 2023-03-16 Y case
173 2023-03-13 2023-03-15 Y case
174 2023-03-24 2023-03-28 Y case
175 2023-03-20 2023-03-27 Y case
176 2023-03-18 2023-03-23 Y case
177 2023-03-17 2023-03-23 Y case
178 2023-03-16 2023-03-20 N under_followup
179 2023-03-12 2023-03-16 N under_followup
180 2023-03-15 2023-03-22 N under_followup
181 2023-03-12 2023-03-21 Y case
182 2023-03-12 2023-03-17 N under_followup
183 2023-03-23 2023-04-01 N lost_to_followup
184 2023-03-29 2023-03-31 N lost_to_followup
185 2023-03-23 2023-03-28 Y case
186 2023-03-24 2023-03-27 N unknown
187 2023-03-22 2023-03-29 N under_followup
188 2023-03-22 2023-03-30 Y case
189 2023-03-24 2023-03-28 N under_followup
190 2023-03-23 2023-03-29 N under_followup
191 2023-03-21 2023-03-30 N under_followup
192 2023-03-22 2023-03-30 N under_followup
193 2023-03-23 2023-03-29 N under_followup
194 2023-03-24 2023-03-27 Y case
195 2023-03-22 2023-03-27 Y case
196 2023-03-23 2023-04-01 Y case
197 2023-03-31 2023-04-06 N under_followup
198 2023-04-03 2023-04-06 Y case
199 2023-03-31 2023-04-07 Y case
200 2023-04-01 2023-04-04 Y case
201 2023-03-26 2023-04-02 Y case
202 2023-03-27 2023-04-03 N under_followup
203 2023-03-29 2023-03-29 N under_followup
204 2023-03-24 2023-04-02 Y case
205 2023-03-26 2023-03-29 N under_followup
206 2023-03-25 2023-03-31 N under_followup
207 2023-03-20 2023-04-03 N under_followup
208 2023-03-24 2023-04-01 Y case
209 2023-03-26 2023-04-03 Y case
210 2023-03-29 2023-03-31 Y case
211 2023-03-25 2023-03-28 N under_followup
212 2023-04-04 2023-04-10 Y case
213 2023-04-02 2023-04-05 Y case
214 2023-04-07 2023-04-08 N under_followup
215 2023-04-04 2023-04-11 N under_followup
216 2023-03-31 2023-04-03 N under_followup
217 2023-03-30 2023-04-06 N under_followup
218 2023-03-30 2023-04-07 Y case
219 2023-03-30 2023-04-08 N under_followup
220 2023-03-31 2023-04-03 Y case
221 2023-03-31 2023-04-04 N lost_to_followup
222 2023-04-01 2023-04-07 N under_followup
223 2023-04-02 2023-04-08 Y case
224 2023-03-29 2023-04-03 N lost_to_followup
225 2023-03-31 2023-04-04 Y case
226 2023-03-27 2023-04-06 N under_followup
227 2023-04-04 2023-04-09 N under_followup
228 2023-04-09 2023-04-12 Y case
229 2023-04-06 2023-04-11 Y case
230 2023-04-09 2023-04-12 N under_followup
231 2023-04-01 2023-04-10 Y case
232 2023-04-02 2023-04-06 Y case
233 2023-04-03 2023-04-09 Y case
234 2023-04-06 2023-04-11 Y case
235 2023-04-03 2023-04-11 Y case
236 2023-04-05 2023-04-08 N unknown
237 2023-04-09 2023-04-14 Y case
238 2023-04-08 2023-04-15 N unknown
239 2023-03-30 2023-04-08 Y case
240 2023-03-30 2023-04-05 N lost_to_followup
241 2023-04-04 2023-04-14 N under_followup
242 2023-04-02 2023-04-15 Y case
243 2023-04-07 2023-04-11 N unknown
244 2023-04-08 2023-04-12 Y case
245 2023-04-08 2023-04-12 N under_followup
246 2023-04-04 2023-04-11 N under_followup
247 2023-04-08 2023-04-14 N under_followup
248 2023-04-07 2023-04-14 N lost_to_followup
249 2023-04-09 2023-04-17 Y case
250 2023-04-09 2023-04-11 Y case
251 2023-04-08 2023-04-13 Y case
252 2023-04-06 2023-04-14 Y case
253 2023-04-11 2023-04-15 Y case
254 2023-04-13 2023-04-19 Y case
255 2023-04-14 2023-04-16 N lost_to_followup
256 2023-04-14 2023-04-16 N under_followup
257 2023-04-11 2023-04-20 Y case
258 2023-04-13 2023-04-18 N lost_to_followup
259 2023-04-13 2023-04-16 N under_followup
260 2023-04-13 2023-04-21 Y case
261 2023-04-10 2023-04-20 Y case
262 2023-04-10 2023-04-16 N unknown
263 2023-04-14 2023-04-22 Y case
264 2023-04-15 2023-04-26 Y case
265 2023-04-15 2023-04-22 N unknown
266 2023-04-19 2023-04-27 Y case
267 2023-04-20 2023-04-23 Y case
268 2023-04-13 2023-04-19 N lost_to_followup
269 2023-04-14 2023-04-21 N under_followup
270 2023-04-13 2023-04-17 N under_followup
271 2023-04-14 2023-04-19 N under_followup
272 2023-04-13 2023-04-16 N lost_to_followup
273 2023-04-23 2023-04-26 N under_followup
274 2023-04-24 2023-04-30 N under_followup
275 2023-04-12 2023-04-16 N under_followup
276 2023-04-11 2023-04-14 Y case
277 2023-04-23 2023-04-29 Y case
278 2023-04-15 2023-04-24 Y case
279 2023-04-16 2023-04-24 Y case
280 2023-04-14 2023-04-21 N unknown
281 2023-04-16 2023-04-22 Y case
282 2023-04-20 2023-04-22 N under_followup
283 2023-04-28 2023-05-01 Y case
284 2023-04-23 2023-05-01 Y case
285 2023-04-22 2023-04-27 N under_followup
286 2023-04-22 2023-04-27 N under_followup
287 2023-04-23 2023-04-26 N under_followup
288 2023-04-21 2023-04-23 N under_followup
289 2023-04-19 2023-04-23 N under_followup
290 2023-04-19 2023-04-23 Y case
291 2023-04-16 2023-04-22 Y case
292 2023-04-29 2023-05-09 Y case
293 2023-04-30 2023-05-05 N under_followup
294 2023-05-02 2023-05-06 N under_followup
295 2023-05-03 2023-05-07 Y case
296 2023-05-01 2023-05-04 N under_followup
297 2023-04-25 2023-05-05 Y case
298 2023-04-27 2023-05-03 N lost_to_followup
299 2023-04-21 2023-04-28 N unknown
300 2023-04-19 2023-05-02 Y case
301 2023-04-18 2023-04-25 Y case
302 2023-05-03 2023-05-08 N unknown
303 2023-05-01 2023-05-07 Y case
304 2023-05-03 2023-05-11 N unknown
305 2023-04-28 2023-05-05 N lost_to_followup
306 2023-04-25 2023-05-06 Y case
307 2023-04-30 2023-05-08 N under_followup
308 2023-04-20 2023-04-24 N lost_to_followup
309 2023-04-19 2023-04-26 Y case
310 2023-04-20 2023-04-27 Y case
311 2023-04-22 2023-04-23 N under_followup
312 2023-04-25 2023-04-30 Y case
313 2023-05-06 2023-05-10 N lost_to_followup
314 2023-05-06 2023-05-10 N lost_to_followup
315 2023-05-05 2023-05-10 Y case
316 2023-05-08 2023-05-09 N under_followup
317 2023-04-21 2023-04-30 N under_followup
318 2023-04-22 2023-05-01 N under_followup
319 2023-04-22 2023-04-28 Y case
320 2023-04-22 2023-04-30 N under_followup
321 2023-04-25 2023-04-29 N under_followup
322 2023-04-21 2023-04-28 N lost_to_followup
323 2023-05-08 2023-05-12 N under_followup
324 2023-05-04 2023-05-15 N unknown
325 2023-04-27 2023-05-03 Y case
326 2023-05-03 2023-05-10 N under_followup
sim_outbreak works as expected
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death)
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Kevin Pullen suspected m 1 2023-01-01 2023-01-01
2 2 Carisa Flores-Gonzalez confirmed f 29 2023-01-01 2023-01-01
3 3 Maazin el-Othman confirmed m 78 2023-01-01 2023-01-01
4 5 Faisal el-Vaziri suspected m 70 2023-01-01 2023-01-01
5 6 Lynsey Duron confirmed f 28 2023-01-01 2023-01-01
6 8 Lilibeth Black confirmed f 61 2023-01-01 2023-01-01
7 11 Kaleb Natarelli confirmed m 86 2023-01-01 2023-01-01
8 12 Collin Stimack confirmed m 71 2023-01-01 2023-01-01
9 13 Marquaja Johnson confirmed f 51 2023-01-01 2023-01-01
10 18 Corey Alcala probable m 49 2023-01-02 2023-01-02
11 20 Erin Payson suspected f 7 2023-01-02 2023-01-02
12 22 Sean Shrestha confirmed m 24 2023-01-02 2023-01-02
date_admission outcome date_outcome date_first_contact date_last_contact
1 2023-01-04 died 2023-01-18 <NA> <NA>
2 2023-01-02 died 2023-02-09 2022-12-30 2023-01-08
3 <NA> recovered <NA> 2022-12-31 2023-01-05
4 2023-01-05 recovered <NA> 2022-12-31 2023-01-04
5 2023-01-14 recovered <NA> 2022-12-29 2023-01-02
6 <NA> recovered <NA> 2022-12-28 2023-01-05
7 <NA> recovered <NA> 2022-12-30 2023-01-04
8 2023-01-02 recovered <NA> 2022-12-28 2023-01-09
9 <NA> recovered <NA> 2022-12-29 2023-01-04
10 <NA> recovered <NA> 2022-12-29 2023-01-04
11 <NA> recovered <NA> 2022-12-31 2023-01-03
12 <NA> recovered <NA> 2022-12-27 2023-01-05
ct_value
1 NA
2 25.8
3 24.9
4 NA
5 24.5
6 26.4
7 27.3
8 20.2
9 26.1
10 NA
11 NA
12 25.7
$contacts
from to age sex date_first_contact
1 Kevin Pullen Carisa Flores-Gonzalez 29 f 2022-12-30
2 Kevin Pullen Maazin el-Othman 78 m 2022-12-31
3 Carisa Flores-Gonzalez Katelyn Catlin 22 f 2022-12-30
4 Carisa Flores-Gonzalez Faisal el-Vaziri 70 m 2022-12-31
5 Maazin el-Othman Lynsey Duron 28 f 2022-12-29
6 Maazin el-Othman Amaani al-Gaber 37 f 2022-12-27
7 Maazin el-Othman Lilibeth Black 61 f 2022-12-28
8 Faisal el-Vaziri Jorge Marten 46 m 2022-12-28
9 Lynsey Duron Jacy Cousins 67 f 2022-12-29
10 Lilibeth Black Kaleb Natarelli 86 m 2022-12-30
11 Lilibeth Black Collin Stimack 71 m 2022-12-28
12 Lilibeth Black Marquaja Johnson 51 f 2022-12-29
13 Kaleb Natarelli Nicholas Orgill 44 m 2022-12-28
14 Kaleb Natarelli Kayla Tudor 49 f 2022-12-30
15 Kaleb Natarelli Maria Eberhart 60 f 2022-12-30
16 Collin Stimack Katja Muetz 56 f 2022-12-24
17 Marquaja Johnson Corey Alcala 49 m 2022-12-29
18 Marquaja Johnson Francisco Zapata Morales 50 m 2022-12-30
19 Marquaja Johnson Erin Payson 7 f 2022-12-31
20 Marquaja Johnson Kevin Waid 20 m 2022-12-29
21 Corey Alcala Sean Shrestha 24 m 2022-12-27
date_last_contact was_case status
1 2023-01-08 Y case
2 2023-01-05 Y case
3 2023-01-03 N under_followup
4 2023-01-04 Y case
5 2023-01-02 Y case
6 2023-01-01 N under_followup
7 2023-01-05 Y case
8 2023-01-02 N lost_to_followup
9 2023-01-04 N lost_to_followup
10 2023-01-04 Y case
11 2023-01-09 Y case
12 2023-01-04 Y case
13 2023-01-04 N under_followup
14 2023-01-02 N under_followup
15 2023-01-05 N under_followup
16 2023-01-04 N unknown
17 2023-01-04 Y case
18 2023-01-03 N lost_to_followup
19 2023-01-03 Y case
20 2023-01-04 N lost_to_followup
21 2023-01-05 Y case
sim_outbreak works as expected with anonymised
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death,
anonymise = TRUE)
Output
$linelist
id case_name case_type sex age date_onset date_reporting date_admission
1 1 OvsRrRMCAJ confirmed m 1 2023-01-01 2023-01-01 2023-01-04
2 2 FEY3qKY39Z probable f 29 2023-01-01 2023-01-01 2023-01-02
3 3 yiuuoY8Kxn confirmed m 78 2023-01-01 2023-01-01 <NA>
4 5 Huaqm1SzNb probable m 70 2023-01-01 2023-01-01 2023-01-05
5 6 O5h4yEtT6t suspected f 28 2023-01-01 2023-01-01 2023-01-14
6 8 8e6yKFNmyd probable f 61 2023-01-01 2023-01-01 <NA>
7 11 Lkhw9tYeb1 confirmed m 86 2023-01-01 2023-01-01 <NA>
8 12 elczXnmE3U suspected m 71 2023-01-01 2023-01-01 2023-01-02
9 13 4HDzSVgVAW confirmed f 51 2023-01-01 2023-01-01 <NA>
10 18 To9HLY9VZd probable m 49 2023-01-02 2023-01-02 <NA>
11 20 czwJ3WvUcV confirmed f 7 2023-01-02 2023-01-02 <NA>
12 22 vu5Ak6RZkf confirmed m 24 2023-01-02 2023-01-02 <NA>
outcome date_outcome date_first_contact date_last_contact ct_value
1 died 2023-01-18 <NA> <NA> 26.4
2 died 2023-02-09 2022-12-30 2023-01-08 NA
3 recovered <NA> 2022-12-31 2023-01-05 26.1
4 recovered <NA> 2022-12-31 2023-01-04 NA
5 recovered <NA> 2022-12-29 2023-01-02 NA
6 recovered <NA> 2022-12-28 2023-01-05 NA
7 recovered <NA> 2022-12-30 2023-01-04 23.9
8 recovered <NA> 2022-12-28 2023-01-09 NA
9 recovered <NA> 2022-12-29 2023-01-04 22.3
10 recovered <NA> 2022-12-29 2023-01-04 NA
11 recovered <NA> 2022-12-31 2023-01-03 24.2
12 recovered <NA> 2022-12-27 2023-01-05 25.6
$contacts
from to age sex date_first_contact date_last_contact was_case
1 OvsRrRMCAJ FEY3qKY39Z 29 f 2022-12-30 2023-01-08 Y
2 OvsRrRMCAJ yiuuoY8Kxn 78 m 2022-12-31 2023-01-05 Y
3 FEY3qKY39Z g7AzDS6oXf 22 f 2022-12-30 2023-01-03 N
4 FEY3qKY39Z Huaqm1SzNb 70 m 2022-12-31 2023-01-04 Y
5 yiuuoY8Kxn O5h4yEtT6t 28 f 2022-12-29 2023-01-02 Y
6 yiuuoY8Kxn ejRt34oCba 37 f 2022-12-27 2023-01-01 N
7 yiuuoY8Kxn 8e6yKFNmyd 61 f 2022-12-28 2023-01-05 Y
8 Huaqm1SzNb PL7XeZaLTm 46 m 2022-12-28 2023-01-02 N
9 O5h4yEtT6t hWsVUBVWYT 67 f 2022-12-29 2023-01-04 N
10 8e6yKFNmyd Lkhw9tYeb1 86 m 2022-12-30 2023-01-04 Y
11 8e6yKFNmyd elczXnmE3U 71 m 2022-12-28 2023-01-09 Y
12 8e6yKFNmyd 4HDzSVgVAW 51 f 2022-12-29 2023-01-04 Y
13 Lkhw9tYeb1 QihvSfYVAR 44 m 2022-12-28 2023-01-04 N
14 Lkhw9tYeb1 DjDafq8m2z 49 f 2022-12-30 2023-01-02 N
15 Lkhw9tYeb1 bFUJRewLYt 60 f 2022-12-30 2023-01-05 N
16 elczXnmE3U BBlIdUTzmc 56 f 2022-12-24 2023-01-04 N
17 4HDzSVgVAW To9HLY9VZd 49 m 2022-12-29 2023-01-04 Y
18 4HDzSVgVAW zuuT3p6Kxu 50 m 2022-12-30 2023-01-03 N
19 4HDzSVgVAW czwJ3WvUcV 7 f 2022-12-31 2023-01-03 Y
20 4HDzSVgVAW V4dJ6ZKaUK 20 m 2022-12-29 2023-01-04 N
21 To9HLY9VZd vu5Ak6RZkf 24 m 2022-12-27 2023-01-05 Y
status
1 case
2 case
3 under_followup
4 case
5 case
6 under_followup
7 case
8 under_followup
9 lost_to_followup
10 case
11 case
12 case
13 under_followup
14 under_followup
15 under_followup
16 unknown
17 case
18 under_followup
19 case
20 under_followup
21 case
sim_outbreak works as expected with age-strat risks
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death,
hosp_risk = age_dep_hosp_risk, hosp_death_risk = age_dep_hosp_death_risk,
non_hosp_death_risk = age_dep_non_hosp_death_risk)
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Wajdi al-Demian probable m 1 2023-01-01 2023-01-01
2 2 Durine Cobb confirmed f 29 2023-01-01 2023-01-01
3 3 Raaid el-Diab suspected m 78 2023-01-01 2023-01-01
4 5 Nickolas Nault confirmed m 70 2023-01-01 2023-01-01
5 6 Shanta Holiday suspected f 28 2023-01-01 2023-01-01
6 8 Mackenzie Ahn probable f 61 2023-01-01 2023-01-01
7 11 Mubarak el-Vaziri probable m 86 2023-01-01 2023-01-01
8 12 Raakaan al-Shams suspected m 71 2023-01-01 2023-01-01
9 13 Mikhaila Carlson confirmed f 51 2023-01-01 2023-01-01
10 18 Tae Woo Nguyen confirmed m 49 2023-01-02 2023-01-02
11 20 Annie Carter probable f 7 2023-01-02 2023-01-02
12 22 Thomas Morales probable m 24 2023-01-02 2023-01-02
date_admission outcome date_outcome date_first_contact date_last_contact
1 2023-01-04 recovered <NA> <NA> <NA>
2 <NA> recovered <NA> 2022-12-30 2023-01-08
3 <NA> recovered <NA> 2022-12-31 2023-01-05
4 2023-01-05 recovered <NA> 2022-12-31 2023-01-04
5 2023-01-14 recovered <NA> 2022-12-29 2023-01-02
6 <NA> recovered <NA> 2022-12-28 2023-01-05
7 <NA> recovered <NA> 2022-12-30 2023-01-04
8 <NA> recovered <NA> 2022-12-28 2023-01-09
9 <NA> recovered <NA> 2022-12-29 2023-01-04
10 <NA> recovered <NA> 2022-12-29 2023-01-04
11 <NA> recovered <NA> 2022-12-31 2023-01-03
12 <NA> recovered <NA> 2022-12-27 2023-01-05
ct_value
1 NA
2 25.2
3 NA
4 25.7
5 NA
6 NA
7 NA
8 NA
9 26.1
10 22.7
11 NA
12 NA
$contacts
from to age sex date_first_contact
1 Wajdi al-Demian Durine Cobb 29 f 2022-12-30
2 Wajdi al-Demian Raaid el-Diab 78 m 2022-12-31
3 Durine Cobb Hope Arshad 22 f 2022-12-30
4 Durine Cobb Nickolas Nault 70 m 2022-12-31
5 Raaid el-Diab Shanta Holiday 28 f 2022-12-29
6 Raaid el-Diab Darian Guyon 37 f 2022-12-27
7 Raaid el-Diab Mackenzie Ahn 61 f 2022-12-28
8 Nickolas Nault Hee Kennedy 46 m 2022-12-28
9 Shanta Holiday Chandra Kilian 67 f 2022-12-29
10 Mackenzie Ahn Mubarak el-Vaziri 86 m 2022-12-30
11 Mackenzie Ahn Raakaan al-Shams 71 m 2022-12-28
12 Mackenzie Ahn Mikhaila Carlson 51 f 2022-12-29
13 Mubarak el-Vaziri Ricardo Sanchez 44 m 2022-12-28
14 Mubarak el-Vaziri Alexandra Johnson 49 f 2022-12-30
15 Mubarak el-Vaziri Kanani Nguyen 60 f 2022-12-30
16 Raakaan al-Shams Nirvana Elizalde Villa 56 f 2022-12-24
17 Mikhaila Carlson Tae Woo Nguyen 49 m 2022-12-29
18 Mikhaila Carlson Alexander Orio 50 m 2022-12-30
19 Mikhaila Carlson Annie Carter 7 f 2022-12-31
20 Mikhaila Carlson Jared Chambers 20 m 2022-12-29
21 Tae Woo Nguyen Thomas Morales 24 m 2022-12-27
date_last_contact was_case status
1 2023-01-08 Y case
2 2023-01-05 Y case
3 2023-01-03 N unknown
4 2023-01-04 Y case
5 2023-01-02 Y case
6 2023-01-01 N lost_to_followup
7 2023-01-05 Y case
8 2023-01-02 N lost_to_followup
9 2023-01-04 N unknown
10 2023-01-04 Y case
11 2023-01-09 Y case
12 2023-01-04 Y case
13 2023-01-04 N unknown
14 2023-01-02 N under_followup
15 2023-01-05 N under_followup
16 2023-01-04 N under_followup
17 2023-01-04 Y case
18 2023-01-03 N under_followup
19 2023-01-03 Y case
20 2023-01-04 N under_followup
21 2023-01-05 Y case
sim_outbreak works as expected with age structure
Code
sim_outbreak(contact_distribution = contact_distribution, infectious_period = infectious_period,
prob_infection = 0.5, onset_to_hosp = onset_to_hosp, onset_to_death = onset_to_death,
population_age = age_struct)
Output
$linelist
id case_name case_type sex age date_onset date_reporting
1 1 Gabriel Black probable m 11 2023-01-01 2023-01-01
2 2 Taylor Graves confirmed f 10 2023-01-01 2023-01-01
3 3 Tyler Kelley suspected m 80 2023-01-01 2023-01-01
4 5 Cody Morales probable m 4 2023-01-01 2023-01-01
5 6 Cheyenne Sayavong confirmed f 84 2023-01-01 2023-01-01
6 8 Chantelle Vazquez-Luevano confirmed f 88 2023-01-01 2023-01-01
7 11 Rushdi al-Ishak confirmed m 71 2023-01-01 2023-01-01
8 12 Pierce Khanthavong suspected m 78 2023-01-01 2023-01-01
9 13 Megan Hayes confirmed f 28 2023-01-01 2023-01-01
10 18 Jackson Carlson confirmed m 51 2023-01-02 2023-01-02
11 20 Susana Varela probable f 75 2023-01-02 2023-01-02
12 22 Qaaid al-Madani probable m 48 2023-01-02 2023-01-02
date_admission outcome date_outcome date_first_contact date_last_contact
1 <NA> recovered <NA> <NA> <NA>
2 <NA> recovered <NA> 2022-12-30 2023-01-08
3 <NA> recovered <NA> 2022-12-31 2023-01-05
4 <NA> recovered <NA> 2022-12-31 2023-01-04
5 <NA> recovered <NA> 2022-12-29 2023-01-02
6 <NA> recovered <NA> 2022-12-28 2023-01-05
7 <NA> recovered <NA> 2022-12-30 2023-01-04
8 2023-01-04 recovered <NA> 2022-12-28 2023-01-09
9 <NA> recovered <NA> 2022-12-29 2023-01-04
10 <NA> recovered <NA> 2022-12-29 2023-01-04
11 2023-01-06 recovered <NA> 2022-12-31 2023-01-03
12 <NA> recovered <NA> 2022-12-27 2023-01-05
ct_value
1 NA
2 28.2
3 NA
4 NA
5 25.0
6 19.2
7 22.8
8 NA
9 28.1
10 23.0
11 NA
12 NA
$contacts
from to age sex
1 Gabriel Black Taylor Graves 10 f
2 Gabriel Black Tyler Kelley 80 m
3 Taylor Graves Carolyn Moore 19 f
4 Taylor Graves Cody Morales 4 m
5 Tyler Kelley Cheyenne Sayavong 84 f
6 Tyler Kelley Mercedes Lovelace 86 f
7 Tyler Kelley Chantelle Vazquez-Luevano 88 f
8 Cody Morales Joewid Le 79 m
9 Cheyenne Sayavong Kendra To 31 f
10 Chantelle Vazquez-Luevano Rushdi al-Ishak 71 m
11 Chantelle Vazquez-Luevano Pierce Khanthavong 78 m
12 Chantelle Vazquez-Luevano Megan Hayes 28 f
13 Rushdi al-Ishak Preston Barringer 1 m
14 Rushdi al-Ishak Amanda Larochelle 13 f
15 Rushdi al-Ishak Dominique Raymond 61 f
16 Pierce Khanthavong Natalie Newton 24 f
17 Megan Hayes Jackson Carlson 51 m
18 Megan Hayes Sam Spencer 73 m
19 Megan Hayes Susana Varela 75 f
20 Megan Hayes Bassaam el-Majid 25 m
21 Jackson Carlson Qaaid al-Madani 48 m
date_first_contact date_last_contact was_case status
1 2022-12-30 2023-01-08 Y case
2 2022-12-31 2023-01-05 Y case
3 2022-12-30 2023-01-03 N under_followup
4 2022-12-31 2023-01-04 Y case
5 2022-12-29 2023-01-02 Y case
6 2022-12-27 2023-01-01 N under_followup
7 2022-12-28 2023-01-05 Y case
8 2022-12-28 2023-01-02 N under_followup
9 2022-12-29 2023-01-04 N lost_to_followup
10 2022-12-30 2023-01-04 Y case
11 2022-12-28 2023-01-09 Y case
12 2022-12-29 2023-01-04 Y case
13 2022-12-28 2023-01-04 N under_followup
14 2022-12-30 2023-01-02 N under_followup
15 2022-12-30 2023-01-05 N under_followup
16 2022-12-24 2023-01-04 N under_followup
17 2022-12-29 2023-01-04 Y case
18 2022-12-30 2023-01-03 N under_followup
19 2022-12-31 2023-01-03 Y case
20 2022-12-29 2023-01-04 N under_followup
21 2022-12-27 2023-01-05 Y case
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