FisheryBySpecie class implements the class of SMART to
handle species samplings.
R6Class with attributes and methods for the fishery data.
Name of the specie.
Years of the time serie.
data.frame, raw length frequency distribution.
data.frame, average abundances by depth' stratum.
data.frame, medits index by depth' stratum.
numeric, length classes.
numeric, number of cohorts.
list of DF, lfd by sex.
plots of LFD statistics.
list of DF, spatial distribution by sex.
list, mcmc output chains.
list of DF, aged individuals by sex.
list of DF, growth parameters by sex.
list of DF, length/weight parameters by sex.
#' @section Methods:
Automatic initialization made by the SmartProject class
This method is used load the initial raw dataset
This method is used to store the years in the provided time-serie
This method is used to store the name of the specie of the initial raw data
This method is used to store the unique length values of the sampled specie
This method is used to assign the depth value corresponding to each sampling location
This method is used to set the depth strata of each sampling location
This method is used to aggregate the abundance data into the medits index
This method is used to standardize the spatial abundances by depth strata
This method is used to setup the number of cohorts for the ageing module
setLWpar(alphaVal, betaVal, sex)
This method is used to store the alpha and beta values for the length/weight relationship
setWeight(sexVal = "Female")
This method is used to compute the fish weight given their length and the LWrelationship
This method is used to spread the aggregated LFD abundances into single individuals
This method is used to setup the plots of the LFD statistics
This method is used to setup the spatial distribution of the single specimens
This method is used to store the spatial plots of the population
getMCsamps(numSamp, numAdap, numIter, sexDrop, curveSel)
This method is used to get a sample of the population to feed the mcmc module
This method is used to extract the growth parameters from the mcmc results
This method is used to assign an age to each fish
This method is used to setup the plot of the mcmc results
calcMixDate(nAdap, nSamp, nIter, sexDrop, curveSel)
This method is used to estimate the growth parameters of a population
This method is used to output the stored plots of mcmc results
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.