smooth_parse: Transform Data to be Used in 'smooth_algorithm()' Function

In smoothy: Automatic Estimation of the Most Likely Drug Combination using Smooth Algorithm

Transform Data to be Used in smooth_algorithm() Function

Description

This function transforms the data to obtain the daily treatment.

Usage

smooth_parse(
  id,
  start_date,
  end_date,
  drug,
  study_from = min(start_date),
  study_to = max(end_date)
)

Arguments

id	Unique identifier of the patient.
start_date	Start date of the treatment.
end_date	End date of the treatment.
drug	Name of the drug used.
study_from	A date indicating when the study start.
study_to	A date indicating when the study finish.

Value

A data.frame with the following structure:

id

Unique identifier of the patient.

drug

Name of the drug used.

day

Day of the treatment.

N

Number of drugs used in the treatment

Examples

library(smoothy)
library(dplyr)

data(drugstreatment)

df <- drugstreatment |>
  filter(id == "01f13c15-d9f1-4106-a04f-976c457edd0a")

structured_df <- smooth_parse(
  id = df$id,
  start_date = df$start_date,
  end_date = df$end_date,
  drug = df$drug,
  study_from = "1970-01-01",
  study_to = "1975-01-01"
)

head(structured_df)

smoothy documentation built on Aug. 11, 2023, 9:06 a.m.