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snpRF: Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias
A modification of Breiman and Cutler's classification random forests modified for SNP (Single Nucleotide Polymorphism) data (based on randomForest v4.6-7) to prevent X-chromosome SNP variable importance bias compared to autosomal SNPs by simulating the process of X chromosome inactivation. Classification is based on a forest of trees using random subsets of SNPs and other variables as inputs.
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Package details |
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| Author | Fortran original by Leo Breiman and Adele Cutler, R port by Andy Liaw and Matthew Wiener. Modifications of randomForest v 4.6-7 for SNPs by Greg Jenkins based on a method developed by Stacey Winham, Greg Jenkins and Joanna Biernacka. |
| Maintainer | Greg Jenkins <jenkins.gregory@mayo.edu> |
| License | GPL (>= 2) |
| Version | 0.4 |
| Package repository | View on CRAN |
| Installation |
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