plot.snpRF: Plot method for snpRF objects

In snpRF: Random Forest for SNPs to Prevent X-chromosome SNP Importance Bias

Description

Plot the error rates or MSE of a snpRF object

Usage

## S3 method for class 'snpRF'
plot(x, type="l", main=deparse(substitute(x)), ...)

Arguments

x	an object of class snpRF.
type	type of plot.
main	main title of the plot.
...	other graphical parameters.

Value

Invisibly, the error rates or MSE of the snpRF object. If the object has a non-null test component, then the returned object is a matrix where the first column is the out-of-bag estimate of error, and the second column is for the test set.

Note

If the x has a non-null test component, then the test set errors are also plotted.

Author(s)

Andy Liaw, with slight modifications for use with snpRF by Greg Jenkins

See Also

snpRF

Examples

data(snpRFexample)
plot(snpRF(x.autosome=autosome.snps,x.xchrom=xchrom.snps,
           xchrom.names=xchrom.snps.names,x.covar=covariates,
           y=phenotype,keep.forest=TRUE), log="y")

snpRF documentation built on May 2, 2019, 6:51 a.m.