Description Usage Arguments Value Note Author(s) See Also Examples
Plot the error rates or MSE of a snpRF object
1 2 | ## S3 method for class 'snpRF'
plot(x, type="l", main=deparse(substitute(x)), ...)
|
x |
an object of class |
type |
type of plot. |
main |
main title of the plot. |
... |
other graphical parameters. |
Invisibly, the error rates or MSE of the snpRF
object.
If the object has a non-null test
component, then the returned
object is a matrix where the first column is the out-of-bag estimate
of error, and the second column is for the test set.
If the x
has a non-null test
component, then the test
set errors are also plotted.
Andy Liaw, with slight modifications for use with snpRF by Greg Jenkins
1 2 3 4 | data(snpRFexample)
plot(snpRF(x.autosome=autosome.snps,x.xchrom=xchrom.snps,
xchrom.names=xchrom.snps.names,x.covar=covariates,
y=phenotype,keep.forest=TRUE), log="y")
|
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