fetchVegdata: Get vegetation plot data from local NASIS database

In soilDB: Soil Database Interface

Get vegetation plot data from local NASIS database

Description

Convenience function for loading most commonly used Vegetation Plot information from local NASIS database.

Usage

fetchVegdata(
  SS = TRUE,
  include_pedon = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_from_NASIS_db(SS = TRUE, stringsAsFactors = NULL, dsn = NULL)

get_vegplot_location_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_trhi_from_NASIS_db(SS = TRUE, stringsAsFactors = NULL, dsn = NULL)

get_vegplot_species_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_transect_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_transpecies_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_transpoints_from_NASIS_db(SS = TRUE, dsn = NULL)

get_vegplot_prodquadrats_from_NASIS_db(SS = TRUE, dsn = NULL)

get_vegplot_tree_si_summary_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_speciesbasalarea_from_NASIS(SS = TRUE, dsn = NULL)

get_vegplot_tree_si_details_from_NASIS_db(
  SS = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

get_vegplot_textnote_from_NASIS_db(
  SS = TRUE,
  fixLineEndings = TRUE,
  stringsAsFactors = NULL,
  dsn = NULL
)

Arguments

SS	fetch data from the currently loaded selected set in NASIS or from the entire local database (default: TRUE)
include_pedon	Include pedon and transect data joined to site? (default: TRUE). If include_pedon is set to "assocuserpedonid" only pedon records that are linked through the Associated User Pedon ID column will have their peiid reported in the vegplot table.
stringsAsFactors	deprecated
dsn	Optional: path to local SQLite database containing NASIS table structure; default: NULL
fixLineEndings	Replace '\r\n' with '\n'; Default: TRUE

Value

A named list containing: "vegplot", "vegplotlocation", "vegplotrhi", "vegplotspecies", "vegtransect", "vegtransplantsum", 'vegsiteindexsum', "vegsiteindexdet", "vegbasalarea", and "vegplottext" tables

soilDB documentation built on April 3, 2025, 6:55 p.m.