summary.lfMsDS: Methods for lfMsDS Object

In spAbundance: Univariate and Multivariate Spatial Modeling of Species Abundance

Methods for lfMsDS Object

Description

Methods for extracting information from fitted latent factor multi-species hierarchical distance sampling (lfMsDS) model.

Usage

## S3 method for class 'lfMsDS'
summary(object, level = 'both', quantiles = c(0.025, 0.5, 0.975), 
        digits = max(3L, getOption("digits") - 3L), ...)
## S3 method for class 'lfMsDS'
print(x, ...)
## S3 method for class 'lfMsDS'
plot(x, param, density = TRUE, ...)

Arguments

object, x	object of class lfMsDS.
level	a quoted keyword that indicates the level to summarize the model results. Valid key words are: "community", "species", or "both".
quantiles	for summary, posterior distribution quantiles to compute.
digits	for summary, number of digits to report.
param	parameter name for which to generate a traceplot. Valid names are "beta", "beta.star", "sigma.sq.mu", "beta.comm", "tau.sq.beta", "alpha", "alpha.star", "sigma.sq.p", "alpha.comm", "tau.sq.alpha", "lambda".
density	logical value indicating whether to also generate a density plot for each parameter in addition to the MCMC traceplot.
...	currently no additional arguments

Details

A set of standard extractor functions for fitted model objects of class lfMsDS, including methods to the generic functions print, summary, and plot.

Value

No return value, called to display summary information of a lfMsDS object.

spAbundance documentation built on Oct. 6, 2024, 1:08 a.m.