spMC: Continuous-Lag Spatial Markov Chains

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A set of functions is provided for 1) the stratum lengths analysis along a chosen direction, 2) fast estimation of continuous lag spatial Markov chains model parameters and probability computing (also for large data sets), 3) transition probability maps and transiograms drawing, 4) simulation methods for categorical random fields.

Author
Luca Sartore
Date of publication
2016-10-22 12:17:39
Maintainer
Luca Sartore <drwolf85@gmail.com>
License
GPL (>= 2)
Version
0.3.8

View on CRAN

Man pages

ACM
ACM Data
boxplot.lengths
Stratum Lengths Boxplot
contour.pemt
Display Contours with Multi-directional Transiograms
density.lengths
Empirical Densities Estimation of Stratum Lengths
embed_MC
Transition Probabilities Estimation for Embedded Markov Chain
getlen
Estimation of Stratum Lengths for Embedded Markov Chain
hist.lengths
Histograms of Stratum Lengths for Each Observed Category
image.multi_tpfit
Images with Multidimensional Transiograms
image.pemt
Images with Multi-directional Transiograms
is.lengths
Object test for lengths class
is.multi_tpfit
Object test for multi_tpfit class
is.multi_transiogram
Object test for multi_transiogram class
is.pemt
Images with Multi-direct'ional Transiograms
is.tpfit
Object test for tpfit class
is.transiogram
Object test for transiogram class
mixplot
Plot of Multiple One-dimensional Transiograms
mlen
Mean Length Estimation for Embedded Markov Chain
multi_tpfit
Multidimensional Model Parameters Estimation
multi_tpfit_ils
Iterated Least Squares Method for Multidimensional Model...
multi_tpfit_me
Maximum Entropy Method for Multidimensional Model Parameters...
multi_tpfit_ml
Mean Length Method for Multidimensional Model Parameters...
pemt
Multi-directional Transiograms Estimation
persp.multi_tpfit
Perspective Plots with Multidimensional Transiograms
persp.pemt
Perspective Plots with Multi-directional Transiograms
plot.density.lengths
Plot Empirical Densities Estimates of Stratum Lengths
plot.hist.lengths
Plot Histograms of Stratum Lengths
plot.lengths
Plot Stratum Lengths
plot.transiogram
Plot One-dimensional Transiograms
predict.multi_tpfit
Compute Theoretical Multidimensional Transiograms
predict.tpfit
Compute Theoretical One-dimensional Transiograms
print.density.lengths
Printing Empirical Densities Estimates of Stratum Lengths
print.lengths
Printing Stratum Lengths for Each Observed Category
print.multi_tpfit
Printing Model Parameters for Multidimensional Continuous Lag...
print.multi_transiogram
Printing Theoretical Multidimensional Transiograms
print.summary.lengths
Printing Stratum Lengths Summary for Each Observed Category
print.tpfit
Printing Model Parameters for One-dimensional Continuous Lag...
print.transiogram
Printing Theoretical or Empirical One-dimensional...
quench
Conditional Simulation Adjuster Via Quenching Algorithm
setCores
Set the number of CPU cores for HPC
sim
Random Field Simulation
sim_ck
Conditional Simulation Based on Indicator Cokriging
sim_ik
Conditional Simulation Based on Indicator Kriging
sim_mcs
Multinomial Categorical Simulation
sim_path
Conditional Simulation Based on Path Algorithms
spMC-package
Continuous Lag Spatial Markov Chains
summary.lengths
Summarizing Stratum Lengths
tpfit
One-dimensional Model Parameters Estimation
tpfit_ils
Iterated Least Squares Method for One-dimensional Model...
tpfit_me
Maximum Entropy Method for One-dimensional Model Parameters...
tpfit_ml
Mean Length Method for One-dimensional Model Parameters...
transiogram
Empirical Transition Probabilities Estimation for 1-D MC
which_lines
Points Classification through Directional Lines

Files in this package

spMC
spMC/COPYING
spMC/inst
spMC/inst/CITATION
spMC/tests
spMC/tests/spMC-Ex.R
spMC/src
spMC/src/Makevars
spMC/src/trans.h
spMC/src/wfun.h
spMC/src/spMC.h
spMC/src/mcs.h
spMC/src/spMC.c
spMC/NAMESPACE
spMC/NEWS
spMC/data
spMC/data/ACM.rda
spMC/R
spMC/R/print.multi_tpfit.R
spMC/R/tpfit_me.R
spMC/R/print.summary.lengths.R
spMC/R/summary.lengths.R
spMC/R/predict.multi_tpfit.R
spMC/R/is.multi_transiogram.R
spMC/R/is.transiogram.R
spMC/R/is.multi_tpfit.R
spMC/R/print.density.lengths.R
spMC/R/persp.pemt.R
spMC/R/multi_tpfit_me.R
spMC/R/plot.hist.lengths.R
spMC/R/sim_mcs.R
spMC/R/sim_ik.R
spMC/R/embed_MC.R
spMC/R/mixplot.R
spMC/R/mlen.R
spMC/R/print.lengths.R
spMC/R/which_lines.R
spMC/R/contour.pemt.R
spMC/R/setCores.R
spMC/R/boxplot.lengths.R
spMC/R/quench.R
spMC/R/plot.density.lengths.R
spMC/R/persp.multi_tpfit.R
spMC/R/is.tpfit.R
spMC/R/print.tpfit.R
spMC/R/multi_tpfit.R
spMC/R/getlen.R
spMC/R/predict.tpfit.R
spMC/R/tpfit_ml.R
spMC/R/is.lengths.R
spMC/R/hist.lengths.R
spMC/R/multi_tpfit_ml.R
spMC/R/print.multi_transiogram.R
spMC/R/multi_tpfit_ils.R
spMC/R/tpfit_ils.R
spMC/R/sim_ck.R
spMC/R/image.multi_tpfit.R
spMC/R/print.transiogram.R
spMC/R/sim.R
spMC/R/is.pemt.R
spMC/R/tpfit.R
spMC/R/density.lengths.R
spMC/R/plot.lengths.R
spMC/R/pemt.R
spMC/R/transiogram.R
spMC/R/zzz.R
spMC/R/sim_path.R
spMC/R/image.pemt.R
spMC/R/plot.transiogram.R
spMC/MD5
spMC/DESCRIPTION
spMC/man
spMC/man/print.density.lengths.Rd
spMC/man/sim_ik.Rd
spMC/man/multi_tpfit_ml.Rd
spMC/man/print.summary.lengths.Rd
spMC/man/mixplot.Rd
spMC/man/pemt.Rd
spMC/man/print.lengths.Rd
spMC/man/predict.multi_tpfit.Rd
spMC/man/multi_tpfit_ils.Rd
spMC/man/multi_tpfit_me.Rd
spMC/man/image.multi_tpfit.Rd
spMC/man/tpfit_ils.Rd
spMC/man/quench.Rd
spMC/man/persp.pemt.Rd
spMC/man/summary.lengths.Rd
spMC/man/sim_mcs.Rd
spMC/man/persp.multi_tpfit.Rd
spMC/man/is.tpfit.Rd
spMC/man/sim_ck.Rd
spMC/man/image.pemt.Rd
spMC/man/transiogram.Rd
spMC/man/is.transiogram.Rd
spMC/man/which_lines.Rd
spMC/man/plot.transiogram.Rd
spMC/man/plot.density.lengths.Rd
spMC/man/tpfit.Rd
spMC/man/is.multi_transiogram.Rd
spMC/man/hist.lengths.Rd
spMC/man/plot.lengths.Rd
spMC/man/print.tpfit.Rd
spMC/man/print.multi_transiogram.Rd
spMC/man/tpfit_me.Rd
spMC/man/print.transiogram.Rd
spMC/man/density.lengths.Rd
spMC/man/contour.pemt.Rd
spMC/man/embed_MC.Rd
spMC/man/mlen.Rd
spMC/man/boxplot.lengths.Rd
spMC/man/getlen.Rd
spMC/man/plot.hist.lengths.Rd
spMC/man/is.lengths.Rd
spMC/man/multi_tpfit.Rd
spMC/man/tpfit_ml.Rd
spMC/man/ACM.Rd
spMC/man/predict.tpfit.Rd
spMC/man/is.multi_tpfit.Rd
spMC/man/setCores.Rd
spMC/man/sim_path.Rd
spMC/man/spMC-package.Rd
spMC/man/sim.Rd
spMC/man/print.multi_tpfit.Rd
spMC/man/is.pemt.Rd
spMC/cleanup