API for spacc
Fast Spatial Species Accumulation Curves
| Global functions | |
|---|---|
| .build_orders | Source code |
| .predict_from_summary | Source code |
| `[.spacc` | Source code |
| ace | Man page Source code |
| alphaDiversity | Man page Source code |
| analytical | Man page |
| as.data.frame.spacc | Source code |
| as.data.frame.spacc_alpha | Source code |
| as.data.frame.spacc_beta | Source code |
| as.data.frame.spacc_beta_decay | Source code |
| as.data.frame.spacc_comp | Source code |
| as.data.frame.spacc_completeness | Source code |
| as.data.frame.spacc_coverage | Source code |
| as.data.frame.spacc_dar | Source code |
| as.data.frame.spacc_decay | Source code |
| as.data.frame.spacc_endemism | Source code |
| as.data.frame.spacc_estimate | Source code |
| as.data.frame.spacc_evenness | Source code |
| as.data.frame.spacc_fit | Source code |
| as.data.frame.spacc_func | Source code |
| as.data.frame.spacc_hill | Source code |
| as.data.frame.spacc_hill_beta | Source code |
| as.data.frame.spacc_hill_coverage | Source code |
| as.data.frame.spacc_mem | Source code |
| as.data.frame.spacc_metrics | Source code |
| as.data.frame.spacc_model_compare | Source code |
| as.data.frame.spacc_partition | Source code |
| as.data.frame.spacc_phylo | Source code |
| as.data.frame.spacc_profile | Source code |
| as.data.frame.spacc_rare | Source code |
| as.data.frame.spacc_ses | Source code |
| as.data.frame.spacc_wavefront | Source code |
| as.data.frame.spacc_zeta | Source code |
| as_sf | Man page Source code |
| as_sf.spacc_alpha | Source code |
| as_sf.spacc_beta | Source code |
| as_sf.spacc_completeness | Source code |
| as_sf.spacc_coverage | Source code |
| as_sf.spacc_endemism | Source code |
| as_sf.spacc_evenness | Source code |
| as_sf.spacc_func | Source code |
| as_sf.spacc_hill | Source code |
| as_sf.spacc_metrics | Source code |
| as_sf.spacc_partition | Source code |
| as_sf.spacc_phylo | Source code |
| as_sf.spacc_profile | Source code |
| as_sf.spacc_ses | Source code |
| as_sf_from_df | Source code |
| autoplot.spacc | Man page Source code |
| autoplot.spacc_beta | Source code |
| autoplot.spacc_completeness | Source code |
| autoplot.spacc_coverage | Source code |
| autoplot.spacc_decay | Source code |
| autoplot.spacc_endemism | Source code |
| autoplot.spacc_fit | Source code |
| autoplot.spacc_hill | Source code |
| autoplot.spacc_hill_beta | Source code |
| autoplot.spacc_hill_coverage | Source code |
| autoplot.spacc_mem | Source code |
| autoplot.spacc_mem_partition | Source code |
| autoplot.spacc_metrics | Source code |
| autoplot.spacc_model_compare | Source code |
| autoplot.spacc_rare | Source code |
| autoplot.spacc_ses | Source code |
| autoplot.spacc_zeta | Source code |
| betaDecay | Man page Source code |
| bootstrap_richness | Man page Source code |
| c.spacc | Man page Source code |
| c.spacc_beta | Man page Source code |
| c.spacc_coverage | Man page Source code |
| c.spacc_hill | Man page Source code |
| calc_auc | Source code |
| calc_chiu_coverage | Source code |
| calc_coverage | Source code |
| calc_faith_pd | Source code |
| calc_fdis | Source code |
| calc_fric_approx | Source code |
| calc_hill_func_site | Source code |
| calc_hill_number | Source code |
| calc_hill_phylo_site | Source code |
| calc_mntd | Source code |
| calc_mpd | Source code |
| calc_rao | Source code |
| calc_rao_traits | Source code |
| calc_sites_to_richness | Source code |
| calc_slope | Source code |
| chao1 | Man page Source code |
| chao2 | Man page Source code |
| chao_log_ci | Source code |
| check_suggests | Source code |
| cli_info | Source code |
| cli_success | Source code |
| coef.spacc_beta_decay | Source code |
| coef.spacc_fit | Source code |
| coef.spacc_model_compare | Source code |
| coleman | Man page Source code |
| collector | Man page Source code |
| compare | Man page Source code |
| compareModels | Man page Source code |
| completenessProfile | Man page Source code |
| confint.spacc_fit | Source code |
| cpp_beta_knn_parallel | Source code |
| cpp_beta_knn_single | Source code |
| cpp_collector_single | Source code |
| cpp_cone_parallel | Source code |
| cpp_cone_single | Source code |
| cpp_distance_decay_parallel | Source code |
| cpp_distance_decay_single | Source code |
| cpp_distance_matrix | Source code |
| cpp_func_knn_parallel | Source code |
| cpp_func_knn_single | Source code |
| cpp_gaussian_parallel | Source code |
| cpp_gaussian_single | Source code |
| cpp_kncn_kdtree_parallel | Source code |
| cpp_kncn_kdtree_single | Source code |
| cpp_kncn_metrics_parallel | Source code |
| cpp_kncn_order | Source code |
| cpp_kncn_parallel | Source code |
| cpp_kncn_single | Source code |
| cpp_knn_coverage_parallel | Source code |
| cpp_knn_coverage_single | Source code |
| cpp_knn_hill_beta_parallel | Source code |
| cpp_knn_hill_coverage_parallel | Source code |
| cpp_knn_hill_parallel | Source code |
| cpp_knn_hill_single | Source code |
| cpp_knn_kdtree_parallel | Source code |
| cpp_knn_kdtree_parallel_seeds | Source code |
| cpp_knn_kdtree_single | Source code |
| cpp_knn_metrics_parallel | Source code |
| cpp_knn_order | Source code |
| cpp_knn_parallel | Source code |
| cpp_knn_parallel_seeds | Source code |
| cpp_knn_single | Source code |
| cpp_order_parallel | Source code |
| cpp_phylo_knn_parallel | Source code |
| cpp_phylo_knn_single | Source code |
| cpp_radius_parallel | Source code |
| cpp_radius_single | Source code |
| cpp_random_parallel | Source code |
| cpp_random_single | Source code |
| cpp_wavefront_parallel | Source code |
| cpp_wavefront_single | Source code |
| curveball | Source code |
| dar | Man page Source code |
| distanceDecay | Man page Source code |
| distances | Man page Source code |
| distances.data.frame | Source code |
| distances.sf | Source code |
| distances.sfc | Source code |
| diversityPartition | Man page Source code |
| diversityProfile | Man page Source code |
| diversityProfileFunc | Man page Source code |
| diversityProfilePhylo | Man page Source code |
| estimate_asymptotic_hill | Source code |
| evenness | Man page Source code |
| extract_metrics | Source code |
| extract_partition_metric | Source code |
| extract_ses_metric | Source code |
| extrapolate | Man page Source code |
| extrapolateCoverage | Man page Source code |
| fit_decay_model | Source code |
| fit_zeta_decline | Source code |
| gammaDiversity | Man page Source code |
| iChao1 | Man page Source code |
| iChao2 | Man page Source code |
| independent_swap | Source code |
| interpolateCoverage | Man page Source code |
| interpolate_at_coverage | Source code |
| is_grouped | Source code |
| jackknife | Man page Source code |
| mao_tau | Man page Source code |
| mst_max_edge | Source code |
| plot.spacc | Man page Source code |
| plot.spacc_alpha | Source code |
| plot.spacc_beta | Source code |
| plot.spacc_beta_decay | Source code |
| plot.spacc_comp | Source code |
| plot.spacc_completeness | Source code |
| plot.spacc_coverage | Source code |
| plot.spacc_coverage_ext | Source code |
| plot.spacc_dar | Source code |
| plot.spacc_decay | Source code |
| plot.spacc_dist | Source code |
| plot.spacc_diversity | Source code |
| plot.spacc_endemism | Source code |
| plot.spacc_estimate | Source code |
| plot.spacc_evenness | Source code |
| plot.spacc_fit | Source code |
| plot.spacc_func | Source code |
| plot.spacc_hill | Source code |
| plot.spacc_hill_beta | Source code |
| plot.spacc_hill_coverage | Source code |
| plot.spacc_mem | Source code |
| plot.spacc_mem_partition | Source code |
| plot.spacc_metrics | Man page Source code |
| plot.spacc_model_compare | Source code |
| plot.spacc_partition | Source code |
| plot.spacc_phylo | Source code |
| plot.spacc_profile | Source code |
| plot.spacc_rare | Source code |
| plot.spacc_ses | Source code |
| plot.spacc_sesars | Source code |
| plot.spacc_sfar | Source code |
| plot.spacc_wavefront | Source code |
| plot.spacc_zeta | Source code |
| plot_spatial_map | Source code |
| predict.spacc | Man page Source code |
| predict.spacc_fit | Source code |
| predict.spacc_model_compare | Source code |
| print.spacc | Source code |
| print.spacc_alpha | Source code |
| print.spacc_beta | Source code |
| print.spacc_beta_decay | Source code |
| print.spacc_comp | Source code |
| print.spacc_completeness | Source code |
| print.spacc_coverage | Source code |
| print.spacc_coverage_ext | Source code |
| print.spacc_dar | Source code |
| print.spacc_decay | Source code |
| print.spacc_dist | Source code |
| print.spacc_diversity | Source code |
| print.spacc_endemism | Source code |
| print.spacc_estimate | Source code |
| print.spacc_evenness | Source code |
| print.spacc_fit | Source code |
| print.spacc_func | Source code |
| print.spacc_hill | Source code |
| print.spacc_hill_beta | Source code |
| print.spacc_hill_coverage | Source code |
| print.spacc_mem | Source code |
| print.spacc_mem_partition | Source code |
| print.spacc_metrics | Source code |
| print.spacc_model_compare | Source code |
| print.spacc_partition | Source code |
| print.spacc_phylo | Source code |
| print.spacc_profile | Source code |
| print.spacc_rare | Source code |
| print.spacc_ses | Source code |
| print.spacc_sesars | Source code |
| print.spacc_sfar | Source code |
| print.spacc_wavefront | Source code |
| print.spacc_zeta | Source code |
| print.summary.spacc | Source code |
| print.summary.spacc_decay | Source code |
| print.summary.spacc_rare | Source code |
| randomize_matrix | Source code |
| rarefy | Man page Source code |
| rarefy_q0 | Source code |
| rarefy_q1 | Source code |
| rarefy_q2 | Source code |
| rarefy_qD | Source code |
| rerun_analysis | Source code |
| resolve_cores | Source code |
| ses | Man page Source code |
| sesars | Man page Source code |
| sfar | Man page Source code |
| spacc | Man page Source code |
| spacc-package | Man page |
| spaccBeta | Man page Source code |
| spaccBetaFunc | Man page Source code |
| spaccBetaPhylo | Man page Source code |
| spaccCoverage | Man page Source code |
| spaccDiversity | Man page Source code |
| spaccEndemism | Man page Source code |
| spaccFunc | Man page Source code |
| spaccHill | Man page Source code |
| spaccHillBeta | Man page Source code |
| spaccHillCoverage | Man page Source code |
| spaccMetrics | Man page Source code |
| spaccPhylo | Man page Source code |
| spacc_theme | Source code |
| spatialEigenvectors | Man page Source code |
| spatialPartition | Man page Source code |
| spatialRarefaction | Man page Source code |
| spatial_swap | Source code |
| subsample | Man page Source code |
| summary.spacc | Source code |
| summary.spacc_alpha | Source code |
| summary.spacc_beta | Source code |
| summary.spacc_beta_decay | Source code |
| summary.spacc_comp | Source code |
| summary.spacc_completeness | Source code |
| summary.spacc_coverage | Source code |
| summary.spacc_coverage_ext | Source code |
| summary.spacc_dar | Source code |
| summary.spacc_decay | Source code |
| summary.spacc_endemism | Source code |
| summary.spacc_estimate | Source code |
| summary.spacc_evenness | Source code |
| summary.spacc_fit | Source code |
| summary.spacc_func | Source code |
| summary.spacc_hill | Source code |
| summary.spacc_hill_beta | Source code |
| summary.spacc_hill_coverage | Source code |
| summary.spacc_mem | Source code |
| summary.spacc_mem_partition | Source code |
| summary.spacc_metrics | Source code |
| summary.spacc_model_compare | Source code |
| summary.spacc_partition | Source code |
| summary.spacc_phylo | Source code |
| summary.spacc_profile | Source code |
| summary.spacc_rare | Source code |
| summary.spacc_ses | Source code |
| summary.spacc_sesars | Source code |
| summary.spacc_sfar | Source code |
| summary.spacc_wavefront | Source code |
| summary.spacc_zeta | Source code |
| torus_shift | Source code |
| wavefront | Man page Source code |
| zetaDiversity | Man page Source code |
