Man pages for spacc
Fast Spatial Species Accumulation Curves
| ace | ACE Richness Estimator |
| alphaDiversity | Alpha Diversity (Per-Site) |
| analytical | Analytical Accumulation Methods |
| as_sf | Convert spacc_metrics to sf |
| autoplot.spacc | Autoplot Methods for spacc Objects |
| betaDecay | Beta Distance-Decay |
| bootstrap_richness | Bootstrap Richness Estimator |
| chao1 | Chao1 Richness Estimator |
| chao2 | Chao2 Richness Estimator |
| coleman | Coleman Expected Accumulation |
| collector | Collector's Curve |
| compare | Compare Two Accumulation Curves |
| compareModels | Compare Multiple SAR Models |
| completenessProfile | Sample Completeness Profile |
| c.spacc | Combine spacc Objects |
| c.spacc_beta | Combine spacc_beta Objects |
| c.spacc_coverage | Combine spacc_coverage Objects |
| c.spacc_hill | Combine spacc_hill Objects |
| dar | Diversity-Area Relationship (DAR) |
| distanceDecay | Distance-Decay Analysis |
| distances | Compute Distance Matrix |
| diversityPartition | Alpha-Beta-Gamma Diversity Partitioning |
| diversityProfile | Diversity Profile |
| diversityProfileFunc | Functional Diversity Profile |
| diversityProfilePhylo | Phylogenetic Diversity Profile |
| evenness | Evenness Profiles |
| extrapolate | Extrapolate Total Species Richness |
| extrapolateCoverage | Extrapolate Richness Beyond Observed Coverage |
| gammaDiversity | Gamma Diversity (Regional) |
| iChao1 | Improved Chao1 (iChao1) Richness Estimator |
| iChao2 | Improved Chao2 (iChao2) Richness Estimator |
| interpolateCoverage | Interpolate Richness at Target Coverage Levels |
| jackknife | Jackknife Richness Estimator |
| mao_tau | Exact (Mao Tau) Expected Accumulation |
| plot.spacc | Plot Spatial SAC |
| plot.spacc_metrics | Plot spacc_metrics |
| predict.spacc | Predict from Empirical Accumulation Curve |
| rarefy | Individual-Based Rarefaction |
| ses | Standardized Effect Size (SES) via Null Models |
| sesars | Sampling Effort Species-Area Relationship (SESARS) |
| sfar | Species-Fragmented Area Relationship (SFAR) |
| spacc | Spatial Species Accumulation Curves |
| spaccBeta | Spatial Beta Diversity Accumulation |
| spaccBetaFunc | Functional Beta Diversity Accumulation |
| spaccBetaPhylo | Phylogenetic Beta Diversity Accumulation |
| spaccCoverage | Coverage-Based Spatial Rarefaction |
| spaccDiversity | Spatial Accumulation of a Custom Diversity Metric |
| spaccEndemism | Spatial Endemism Accumulation |
| spaccFunc | Spatial Functional Diversity Accumulation |
| spaccHill | Spatial Accumulation with Hill Numbers |
| spaccHillBeta | Spatial Hill Number Beta Diversity |
| spaccHillCoverage | Spatial Hill Numbers at Standardized Coverage |
| spaccMetrics | Per-Site Accumulation Metrics |
| spacc-package | spacc: Fast Spatial Species Accumulation Curves |
| spaccPhylo | Spatial Phylogenetic Diversity Accumulation |
| spatialEigenvectors | Spatial Eigenvectors (PCNM/dbMEM) |
| spatialPartition | Spatial Variance Partitioning with MEMs |
| spatialRarefaction | Spatially-Constrained Rarefaction |
| subsample | Spatial Subsampling |
| wavefront | Wavefront Expansion Accumulation |
| zetaDiversity | Zeta Diversity |
