sparcl: Perform sparse hierarchical clustering and sparse k-means clustering
Version 1.0.3

Implements the sparse clustering methods of Witten and Tibshirani (2010): "A framework for feature selection in clustering"; published in Journal of the American Statistical Association 105(490): 713-726.

Browse man pages Browse package API and functions Browse package files

AuthorDaniela M. Witten and Robert Tibshirani
Date of publication2013-01-04 08:56:50
MaintainerDaniela Witten <dwitten@u.washington.edu>
LicenseGPL-2
Version1.0.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("sparcl")

Man pages

ColorDendrogram: Color the leaves in a hierarchical clustering dendrogram
HierarchicalSparseCluster: Hierarchical sparse clustering
HierarchicalSparseCluster.permute: Choose tuning parameter for sparse hierarchical clustering
HierarchicalSparseCluster.wrapper: A wrapper for the hierarchical sparse clustering algorithm
KMeansSparseCluster: Performs sparse k-means clustering
KMeansSparseCluster.permute: Choose tuning parameter for sparse k-means clustering
sparcl-package: Performs sparse hierarchical and sparse K-means clustering

Functions

BinarySearch Source code
ColorDendrogram Man page
GetUW Source code
GetWCSS Source code
HierarchicalSparseCluster Man page
HierarchicalSparseCluster.permute Man page
HierarchicalSparseCluster.wrapper Man page
KMeansSparseCluster Man page
KMeansSparseCluster.permute Man page
PrintIt Source code
UpdateCs Source code
UpdateWs Source code
distfun Source code
extract.prefix Source code
l2n Source code
multfun Source code
onLoad Source code
output.cluster.files.fun Source code
output.matrix Source code
plot.HierarchicalSparseCluster Man page Source code
plot.HierarchicalSparseCluster.permute Man page Source code
plot.KMeansSparseCluster Man page Source code
plot.KMeansSparseCluster.permute Man page Source code
print.HierarchicalSparseCluster Man page Source code
print.HierarchicalSparseCluster.permute Man page Source code
print.KMeansSparseCluster Man page Source code
print.KMeansSparseCluster.permute Man page Source code
print.kmeanssparse Source code
read.gct Source code
soft Source code
sparcl Man page
sparcl-package Man page

Files

MD5
man
man/KMeansSparseCluster.permute.Rd
man/sparcl-package.Rd
man/ColorDendrogram.Rd
man/HierarchicalSparseCluster.wrapper.Rd
man/HierarchicalSparseCluster.permute.Rd
man/KMeansSparseCluster.Rd
man/HierarchicalSparseCluster.Rd
src
src/distfun.f
src/multfun.f
R
R/KMeansSparseCluster.R
R/KMeansSparseCluster.permute.R
R/distfun.R
R/zzz.R
R/ColorDendrogram.R
R/HierarchicalSparseCluster.permute.R
R/HierarchicalSparseCluster.wrapper.R
R/multfun.R
R/HierarchicalSparseCluster.R
R/SparseClustering.R
DESCRIPTION
NAMESPACE
sparcl documentation built on May 20, 2017, 6:02 a.m.