sparsebnUtils: Utilities for Learning Sparse Bayesian Networks

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A set of tools for representing and estimating sparse Bayesian networks from continuous and discrete data.

Author
Bryon Aragam [aut, cre], Jiaying Gu [aut]
Date of publication
2016-11-20 09:19:38
Maintainer
Bryon Aragam <sparsebn@gmail.com>
License
GPL (>= 2)
Version
0.0.3
URLs

View on CRAN

Man pages

as.data.frame.sparsebnData
Convert a sparsebnData object back to a data.frame
as.edgeList
as.edgeList
as.sparse
as.sparse
coerce_discrete
Recode discrete data
count.interventions
Count the number of rows under intervention
count.levels
Count the number of levels per variable
edgeList
edgeList class
estimate.parameters
Estimate the parameters of a Bayesian network
fit_glm_dag
Inference in Bayesian networks
fit_multinom_dag
Inference in discrete Bayesian networks
generate.lambdas
generate.lambdas
get.adjacency.matrix
get.adjacency.matrix
get.covariance
Covariance and precision matrices
get.lambdas
get.lambdas
get.nodes
get.nodes
get.solution
Select solutions from a solution path
is.obs
Check if data is observational
is.zero
is.zero
num.edges
num.edges
num.nodes
num.nodes
num.samples
num.samples
plot.edgeList
Plot a fitted Bayesian network object
random.dag
Generate random DAGs
random.spd
Generate a random positive definite matrix
select
Select solutions from a solution path
select.parameter
Tuning parameter selection
setGraphPackage
Change data structure for representing graphs internally
setPlotPackage
Change default plotting mechanism
show.parents
Inspect subgraph
sparse
sparse class
sparsebnData
sparsebnData class
sparsebnFit
sparsebnFit class
sparsebn-functions
Utility functions
sparsebn-messages
Messages
sparsebnPath
sparsebnPath class
sparsebnUtils
sparsebnUtils: Utilities for the sparsebn package.
to_bn
Conversion to bnlearn object
to_edgeList
Conversion to edgeList object
to_graphNEL
Conversion to graphNEL object
to_igraph
Conversion to igraph object
to_network
Conversion to network object

Files in this package

sparsebnUtils
sparsebnUtils/tests
sparsebnUtils/tests/testthat.R
sparsebnUtils/tests/testthat
sparsebnUtils/tests/testthat/test-random_spd.R
sparsebnUtils/tests/testthat/helper-sparsebnUtils-generate_objects.R
sparsebnUtils/tests/testthat/test-col_classes.R
sparsebnUtils/tests/testthat/test-show_parents.R
sparsebnUtils/tests/testthat/test-generate_lambdas.R
sparsebnUtils/tests/testthat/test-as.R
sparsebnUtils/tests/testthat/test-coerce_discrete.R
sparsebnUtils/tests/testthat/test-check_list_classes.R
sparsebnUtils/tests/testthat/test-inference.R
sparsebnUtils/tests/testthat/test-get_adjacency_matrix.R
sparsebnUtils/tests/testthat/test-sparsebnFit.R
sparsebnUtils/tests/testthat/test-num_edges.R
sparsebnUtils/tests/testthat/test-select.R
sparsebnUtils/tests/testthat/test-count_nas.R
sparsebnUtils/tests/testthat/test-setGraphPackage.R
sparsebnUtils/tests/testthat/test-compatibility.R
sparsebnUtils/tests/testthat/test-random_dag.R
sparsebnUtils/tests/testthat/test-num_nodes.R
sparsebnUtils/tests/testthat/test-s3_reIndex.R
sparsebnUtils/tests/testthat/test-cor_vector.R
sparsebnUtils/tests/testthat/test-check_if_data_matrix.R
sparsebnUtils/tests/testthat/test-fit_multinom_dag.R
sparsebnUtils/tests/testthat/test-sparse.R
sparsebnUtils/tests/testthat/test-sparsebnPath.R
sparsebnUtils/tests/testthat/test-list_classes.R
sparsebnUtils/tests/testthat/test-graphNEL.R
sparsebnUtils/tests/testthat/test-check_if_matrix.R
sparsebnUtils/tests/testthat/test-sparsebnData.R
sparsebnUtils/tests/testthat/test-edgeList.R
sparsebnUtils/tests/testthat/test-select_parameter.R
sparsebnUtils/NAMESPACE
sparsebnUtils/NEWS.md
sparsebnUtils/R
sparsebnUtils/R/network-compatibility.R
sparsebnUtils/R/sparsebnUtils-covariance.R
sparsebnUtils/R/s3-sparsebnData.R
sparsebnUtils/R/sparsebnUtils-utils.R
sparsebnUtils/R/sparsebnUtils-show.R
sparsebnUtils/R/sparsebnUtils-generate.R
sparsebnUtils/R/s3-sparsebnFit.R
sparsebnUtils/R/sparsebnUtils-inference.R
sparsebnUtils/R/sparsebnUtils.R
sparsebnUtils/R/sparsebnUtils-messages.R
sparsebnUtils/R/sparsebnUtils-selection.R
sparsebnUtils/R/sparsebnUtils-options.R
sparsebnUtils/R/graph-compatibility.R
sparsebnUtils/R/s3-generics.R
sparsebnUtils/R/sparsebnUtils-lambdas.R
sparsebnUtils/R/s3-sparse.R
sparsebnUtils/R/s3-edgeList.R
sparsebnUtils/R/s3-sparsebnPath.R
sparsebnUtils/R/sparsebnUtils-defaults.R
sparsebnUtils/R/bnlearn-compatibility.R
sparsebnUtils/R/igraph-compatibility.R
sparsebnUtils/R/zzz.R
sparsebnUtils/R/sparsebnUtils-functions.R
sparsebnUtils/README.md
sparsebnUtils/MD5
sparsebnUtils/DESCRIPTION
sparsebnUtils/man
sparsebnUtils/man/estimate.parameters.Rd
sparsebnUtils/man/get.adjacency.matrix.Rd
sparsebnUtils/man/select.parameter.Rd
sparsebnUtils/man/random.spd.Rd
sparsebnUtils/man/sparsebn-functions.Rd
sparsebnUtils/man/count.interventions.Rd
sparsebnUtils/man/sparsebnFit.Rd
sparsebnUtils/man/random.dag.Rd
sparsebnUtils/man/is.zero.Rd
sparsebnUtils/man/sparse.Rd
sparsebnUtils/man/get.solution.Rd
sparsebnUtils/man/as.data.frame.sparsebnData.Rd
sparsebnUtils/man/sparsebn-messages.Rd
sparsebnUtils/man/to_network.Rd
sparsebnUtils/man/coerce_discrete.Rd
sparsebnUtils/man/sparsebnUtils.Rd
sparsebnUtils/man/as.edgeList.Rd
sparsebnUtils/man/get.covariance.Rd
sparsebnUtils/man/is.obs.Rd
sparsebnUtils/man/fit_glm_dag.Rd
sparsebnUtils/man/as.sparse.Rd
sparsebnUtils/man/sparsebnData.Rd
sparsebnUtils/man/setPlotPackage.Rd
sparsebnUtils/man/fit_multinom_dag.Rd
sparsebnUtils/man/setGraphPackage.Rd
sparsebnUtils/man/to_igraph.Rd
sparsebnUtils/man/to_edgeList.Rd
sparsebnUtils/man/num.nodes.Rd
sparsebnUtils/man/to_graphNEL.Rd
sparsebnUtils/man/get.nodes.Rd
sparsebnUtils/man/num.edges.Rd
sparsebnUtils/man/get.lambdas.Rd
sparsebnUtils/man/edgeList.Rd
sparsebnUtils/man/sparsebnPath.Rd
sparsebnUtils/man/count.levels.Rd
sparsebnUtils/man/to_bn.Rd
sparsebnUtils/man/plot.edgeList.Rd
sparsebnUtils/man/show.parents.Rd
sparsebnUtils/man/generate.lambdas.Rd
sparsebnUtils/man/select.Rd
sparsebnUtils/man/num.samples.Rd