Kres: Residual K Function

In spatstat.model: Parametric Statistical Modelling and Inference for the 'spatstat' Family

Residual K Function

Description

Given a point process model fitted to a point pattern dataset, this function computes the residual K function, which serves as a diagnostic for goodness-of-fit of the model.

Usage

   Kres(object, ...)

Arguments

object	Object to be analysed. Either a fitted point process model (object of class "ppm"), a point pattern (object of class "ppp"), a quadrature scheme (object of class "quad"), or the value returned by a previous call to Kcom.
...	Arguments passed to Kcom.

Details

This command provides a diagnostic for the goodness-of-fit of a point process model fitted to a point pattern dataset. It computes a residual version of the K function of the dataset, which should be approximately zero if the model is a good fit to the data.

In normal use, object is a fitted point process model or a point pattern. Then Kres first calls Kcom to compute both the nonparametric estimate of the K function and its model compensator. Then Kres computes the difference between them, which is the residual K-function.

Alternatively, object may be a function value table (object of class "fv") that was returned by a previous call to Kcom. Then Kres computes the residual from this object.

Value

A function value table (object of class "fv"), essentially a data frame of function values. There is a plot method for this class. See fv.object.

Author(s)

\adrian

, \ege and Jesper \Moller.

References

Baddeley, A., Rubak, E. and \Moller, J. (2011) Score, pseudo-score and residual diagnostics for spatial point process models. Statistical Science 26, 613–646.

See Also

Related functions: Kcom, Kest.

Alternative functions: Gres, psstG, psstA, psst.

Point process models: ppm.

Examples

    fit0 <- ppm(cells ~1) # uniform Poisson
    
    K0 <- Kres(fit0)
    K0
    plot(K0)
# isotropic-correction estimate
    plot(K0, ires ~ r)
# uniform Poisson is clearly not correct

    fit1 <- ppm(cells ~1, Strauss(0.08))
    
    K1 <- Kres(fit1)

    if(interactive()) {
      plot(K1, ires ~ r)
   # fit looks approximately OK; try adjusting interaction distance
      plot(Kres(cells, interaction=Strauss(0.12)))
    }

# How to make envelopes
    
      E <- envelope(fit1, Kres, model=fit1, nsim=19)
      plot(E)
    

# For computational efficiency
    Kc <- Kcom(fit1)
    K1 <- Kres(Kc)

spatstat.model documentation built on Sept. 30, 2024, 9:26 a.m.