Nothing
# TODO: Add comment
#
# Author: ablommaert
###############################################################################
context( "Equivalence subsetting processInTime" )
exampleSpectra <- getSpectraInTimeExample()
exampleSpectraComp <- spectralNMF( exampleSpectra , rank = 2 , subsamplingFactor = 10 , nruns =1 )
test_that( "Identical subsetting process times " , {
expect_equal( exampleSpectra[1:10, 1:10] , exampleSpectraComp[1:10, 1:10] )
expect_equal( exampleSpectra[1:10, ] , exampleSpectraComp[1:10, ] )
expect_equal( exampleSpectra[ , r(300, 350) ] , exampleSpectraComp[ , r(300, 350) ] )
expect_equal( exampleSpectra[ , e(300, 350) ] , exampleSpectraComp[ , e(300, 350) ] )
}
)
preprocessedSpectra <- smooth( baselineCorrect( normalize( exampleSpectra ) ))
test_that( "Identical preprocessing SpectraInTime and SpectraInTimeComp" , {
expect_equal( smooth( exampleSpectra ) , smooth( exampleSpectraComp ) )
expect_equal( baselineCorrect( exampleSpectra ) , baselineCorrect( exampleSpectraComp ) )
expect_equal( preprocessedSpectra , preprocess( exampleSpectraComp , with = preprocessedSpectra ) )
}
)
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