polyBalance: Balance of a phylogenetic tree with polytomies
In spider: Species Identity and Evolution in R
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
This function computes the numbers of descendants for each dichotomous
branch of a phylogenetic tree.
Usage
1
polyBalance(phy)
Arguments
phy
A tree of class ‘phylo’.
Details
The function extends balance to allow the balance of a tree
with polytomies to be calculated. When the tree is fully dichotomous, the
result is identical to balance.
Value
A numeric matrix with two columns and one row for each node of the
tree. The columns give the numbers of descendants on each node.
Non-dichotomous nodes are reported as 'NA'.
Author(s)
Samuel Brown <s_d_j_brown@hotmail.com>
See Also
Examples
1
2
3
4
5
set.seed(55)
tr <- ape::rtree(15)
tr2 <- ape::di2multi(tr, tol=0.02)
polyBalance(tr)
polyBalance(tr2)
spider documentation built on May 2, 2019, 7:31 a.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
This function computes the numbers of descendants for each dichotomous branch of a phylogenetic tree.
Usage
1 | polyBalance(phy)
|
Arguments
phy |
A tree of class ‘phylo’. |
Details
The function extends balance to allow the balance of a tree
with polytomies to be calculated. When the tree is fully dichotomous, the
result is identical to balance.
Value
A numeric matrix with two columns and one row for each node of the tree. The columns give the numbers of descendants on each node. Non-dichotomous nodes are reported as 'NA'.
Author(s)
Samuel Brown <s_d_j_brown@hotmail.com>
See Also
Examples
1 2 3 4 5 | set.seed(55)
tr <- ape::rtree(15)
tr2 <- ape::di2multi(tr, tol=0.02)
polyBalance(tr)
polyBalance(tr2)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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