seqStat: Sequence statistics

Description Usage Arguments Details Value Author(s) Examples

View source: R/seqStat.R

Description

Utility that produces a table giving summary statistics for a ‘DNAbin’ object.

Usage

1
seqStat(DNAbin, thresh = 500)

Arguments

DNAbin

Alignment of class ‘DNAbin’.

thresh

Threshold sequence length. Default of 500 (minimum length for official DNA barcodes).

Details

This function considers bases coded as '?', 'N' and '-' as missing data.

Value

A table giving the minimum, maximum, mean and median sequence lengths, and the number of sequences with lengths below the given threshold.

Author(s)

Rupert Collins <[email protected]>

Examples

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spider documentation built on Feb. 17, 2018, 1:02 a.m.