spiders: Fits Predator Preferences Model

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Fits and simulates data from our predator preferences model, <DOI:10.1007/s10651-016-0341-3>.

Author
Edward A. Roualdes [cre, aut], Simon J. Bonner [aut]
Date of publication
2016-03-02 23:35:57
Maintainer
Edward A. Roualdes <eroualdes@csuchico.edu>
License
GPL (>= 2.0)
Version
1.2

View on CRAN

Man pages

calcHypotheses
calculate hypotheses
checkHypotheses
function to check user specified hypotheses
converged
checks convergence of the parameters for the estimation...
est1
estimate hypothesis c_st = 1
estC
estimate hypothesis c_st = c
estCs
estimate hypothesis c_st = c_s
estCst
estimate hypothesis c_st
estCt
estimate hypothesis c_st = c_t
estGen
estimate a reparameterization of the hypothesis c_st
getTimeCounts
sum specified columns by time
ll
observed count log-likelihood of predator preferances model
llEM
non-observed count log-likelihood of predators preferances
predPref
parameter estimation
print.summary.predPref
predPref summary print
simPref
simulate data
spiders-package
Fits predator preferences model.
summary.predPref
predPref summary
sumSp
sum over species to get a vector of values for each time...
sumT
sum over times to get a vector of values for each species
testC
linear contrast of c_st

Files in this package

spiders
spiders/inst
spiders/inst/CITATION
spiders/inst/doc
spiders/inst/doc/spiders.html
spiders/inst/doc/spiders.R
spiders/inst/doc/spiders.Rmd
spiders/tests
spiders/tests/testthat
spiders/tests/testthat/test_predPref.R
spiders/tests/test-all.R
spiders/NAMESPACE
spiders/R
spiders/R/contrasts.R
spiders/R/summary.predPref.R
spiders/R/simPref.R
spiders/R/predPref.R
spiders/R/hypotheses.R
spiders/R/estimateCst.R
spiders/R/estimate1.R
spiders/R/estimateGen.R
spiders/R/estimateC.R
spiders/R/estimateCs.R
spiders/R/util.R
spiders/R/likelihood.R
spiders/R/estimateCt.R
spiders/vignettes
spiders/vignettes/refs.bib
spiders/vignettes/spiders.Rmd
spiders/README.md
spiders/MD5
spiders/build
spiders/build/vignette.rds
spiders/DESCRIPTION
spiders/man
spiders/man/estC.Rd
spiders/man/simPref.Rd
spiders/man/testC.Rd
spiders/man/converged.Rd
spiders/man/llEM.Rd
spiders/man/ll.Rd
spiders/man/sumSp.Rd
spiders/man/estCt.Rd
spiders/man/spiders-package.Rd
spiders/man/calcHypotheses.Rd
spiders/man/estCst.Rd
spiders/man/estCs.Rd
spiders/man/print.summary.predPref.Rd
spiders/man/estGen.Rd
spiders/man/getTimeCounts.Rd
spiders/man/predPref.Rd
spiders/man/sumT.Rd
spiders/man/summary.predPref.Rd
spiders/man/checkHypotheses.Rd
spiders/man/est1.Rd