spocc: Interface to Species Occurrence Data Sources

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A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility ('GBIF'), 'USGSs' Biodiversity Information Serving Our Nation ('BISON'), 'iNaturalist', Berkeley 'Ecoinformatics' Engine, 'eBird', 'AntWeb', Integrated Digitized 'Biocollections' ('iDigBio'), 'VertNet', Ocean 'Biogeographic' Information System ('OBIS'), and Atlas of Living Australia ('ALA'). Includes functionality for retrieving species occurrence data, and combining those data.

Author
Scott Chamberlain [aut, cre], Karthik Ram [ctb], Ted Hart [ctb]
Date of publication
2016-12-07 08:43:54
Maintainer
Scott Chamberlain <myrmecocystus@gmail.com>
License
MIT + file LICENSE
Version
0.6.0
URLs

View on CRAN

Man pages

as.ala
Coerce occurrence keys to ALA id objects
as.antweb
Coerce occurrence keys to antwebkey/occkey objects
as.bison
Coerce occurrence keys to bisonkey/occkey objects
as.ecoengine
Coerce occurrence keys to ecoenginekey/occkey objects
as.gbif
Coerce occurrence keys to gbifkey/occkey objects
as.idigbio
Coerce occurrence keys to idigbio objects
as.inat
Coerce occurrence keys to iNaturalist id objects
as.obis
Coerce occurrence keys to obis id objects
as.vertnet
Coerce occurrence keys to vertnetkey/occkey objects
bbox2wkt
Convert a bounding box to a Well Known Text polygon, and a...
fixnames
Change names to be the same for each taxon.
inspect
Get more data on individual occurrences.
occ
Search for species occurrence data across many data sources.
occ2df
Combine results from occ calls to a single data.frame
occ_coverage
Automatically generate coverages for a spocc search
occ_names
Search for species names across many data sources.
occ_names_options
Look up options for parameters passed to each source for...
occ_options
Look up options for parameters passed to each source
spocc_capwords
Capitalize the first letter of a character string.
spocc_duplicates
A note about duplicate occurrence records
spocc_objects
spocc objects and their print, plot, and summary methods
spocc-package
Interface to many species occurrence data sources
wkt
Read or write WKT
wkt_vis
Visualize well-known text area's on a map.

Files in this package

spocc
spocc/inst
spocc/inst/doc
spocc/inst/doc/spocc_vignette.html
spocc/inst/doc/spocc_vignette.Rmd
spocc/inst/js
spocc/inst/js/README-terraformer.md
spocc/inst/js/terraformer-wkt-parser.js
spocc/inst/js/LICENSE-terraformer
spocc/inst/js/turf-centroid.js
spocc/inst/js/LICENSE-turf-centroid.R
spocc/tests
spocc/tests/testthat.R
spocc/tests/testthat
spocc/tests/testthat/test-occ2df.R
spocc/tests/testthat/test-paging.R
spocc/tests/testthat/test-options.R
spocc/tests/testthat/test-taxize-integration.R
spocc/tests/testthat/test-has_coords.R
spocc/tests/testthat/test-idbasedsearch.R
spocc/tests/testthat/test-geometry.R
spocc/tests/testthat/test-occ.R
spocc/tests/testthat/test-common_params.R
spocc/tests/testthat/test-wkt_vis.R
spocc/NAMESPACE
spocc/NEWS.md
spocc/R
spocc/R/read_wkt.R
spocc/R/ala_helpers.R
spocc/R/inspect.R
spocc/R/fixnames.r
spocc/R/on_load.R
spocc/R/spocc_duplicates.R
spocc/R/occ_names.R
spocc/R/spocc-package.R
spocc/R/as.ecoengine.R
spocc/R/occ_options.r
spocc/R/as.ala.R
spocc/R/wkt_bbox.R
spocc/R/as.gbif.R
spocc/R/occ_names_options.R
spocc/R/as.antweb.R
spocc/R/occ2df.R
spocc/R/ecoengine_helpers.R
spocc/R/plugin_helpers.R
spocc/R/as.obis.R
spocc/R/obis_helpers.R
spocc/R/occ_coverage.R
spocc/R/zzz.r
spocc/R/occ.r
spocc/R/as.vertnet.R
spocc/R/as.bison.R
spocc/R/wkt_vis.r
spocc/R/rename.R
spocc/R/as.idigbio.R
spocc/R/inat.R
spocc/R/methods.r
spocc/R/plugins.r
spocc/R/handle_sp.R
spocc/R/as.inat.R
spocc/R/antweb_helpers.R
spocc/R/rbindfill.R
spocc/vignettes
spocc/vignettes/img
spocc/vignettes/img/ggplot2.png
spocc/vignettes/img/shiny.png
spocc/vignettes/img/leaflet.png
spocc/vignettes/img/baseplots.png
spocc/vignettes/img/gist.png
spocc/vignettes/spocc_vignette.Rmd
spocc/README.md
spocc/MD5
spocc/build
spocc/build/vignette.rds
spocc/DESCRIPTION
spocc/man
spocc/man/occ_coverage.Rd
spocc/man/bbox2wkt.Rd
spocc/man/spocc_duplicates.Rd
spocc/man/occ.Rd
spocc/man/spocc-package.Rd
spocc/man/fixnames.Rd
spocc/man/as.gbif.Rd
spocc/man/as.idigbio.Rd
spocc/man/as.bison.Rd
spocc/man/occ2df.Rd
spocc/man/as.ala.Rd
spocc/man/as.obis.Rd
spocc/man/occ_names_options.Rd
spocc/man/spocc_capwords.Rd
spocc/man/as.antweb.Rd
spocc/man/wkt_vis.Rd
spocc/man/as.vertnet.Rd
spocc/man/as.inat.Rd
spocc/man/as.ecoengine.Rd
spocc/man/wkt.Rd
spocc/man/spocc_objects.Rd
spocc/man/occ_options.Rd
spocc/man/inspect.Rd
spocc/man/occ_names.Rd
spocc/LICENSE