ssd_plot: Plot Species Sensitivity Data and Distributions

In ssdtools: Species Sensitivity Distributions

Plot Species Sensitivity Data and Distributions

Description

Plots species sensitivity data and distributions.

Usage

ssd_plot(
  data,
  pred,
  left = "Conc",
  right = left,
  ...,
  label = NULL,
  shape = NULL,
  color = NULL,
  size,
  linetype = NULL,
  linecolor = NULL,
  xlab = "Concentration",
  ylab = "Species Affected",
  ci = TRUE,
  ribbon = TRUE,
  hc = 0.05,
  shift_x = 3,
  add_x = 0,
  bounds = c(left = 1, right = 1),
  big.mark = ",",
  suffix = "%",
  trans = "log10",
  xbreaks = waiver(),
  xlimits = NULL,
  text_size = 11,
  label_size = 2.5,
  theme_classic = FALSE
)

Arguments

data	A data frame.
pred	A data frame of the predictions.
left	A string of the column in data with the concentrations.
right	A string of the column in data with the right concentration values.
...	Unused.
label	A string of the column in data with the labels.
shape	A string of the column in data for the shape aesthetic.
color	A string of the column in data for the color aesthetic.
size	A number for the size of the labels. Deprecated for label_size. #'
linetype	A string of the column in pred to use for the linetype.
linecolor	A string of the column in pred to use for the line color.
xlab	A string of the x-axis label.
ylab	A string of the x-axis label.
ci	A flag specifying whether to estimate confidence intervals (by bootstrapping).
ribbon	A flag indicating whether to plot the confidence interval as a grey ribbon as opposed to green solid lines.
hc	A value between 0 and 1 indicating the proportion hazard concentration (or NULL).
shift_x	The value to multiply the label x values by (after adding add_x).
add_x	The value to add to the label x values (before multiplying by shift_x).
bounds	A named non-negative numeric vector of the left and right bounds for uncensored missing (0 and Inf) data in terms of the orders of magnitude relative to the extremes for non-missing values.
big.mark	A string specifying used between every 3 digits to separate thousands on the x-axis.
suffix	Additional text to display after the number on the y-axis.
trans	A string of which transformation to use. Accepted values include "log10", "log", and "identity" ("log10" by default).
xbreaks	The x-axis breaks as one of: NULL for no breaks waiver() for the default breaks A numeric vector of positions
xlimits	The x-axis limits as one of: NULL to use the default scale range A numeric vector of length two providing the limits. Use NA to refer to the existing minimum or maximum limits.
text_size	A number for the text size.
label_size	A number for the size of the labels.
theme_classic	A flag specifying whether to use the classic theme or the default.

See Also

ssd_plot_cdf() and geom_ssdpoint()

Examples

ssd_plot(ssddata::ccme_boron, boron_pred, label = "Species", shape = "Group")

ssdtools documentation built on April 4, 2025, 12:35 a.m.