st: Shrinkage t Statistic and Correlation-Adjusted t-Score
Version 1.2.5

Implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009). It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.

AuthorRainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Date of publication2015-07-08 22:37:28
MaintainerKorbinian Strimmer <strimmerlab@gmail.com>
LicenseGPL (>= 3)
Version1.2.5
URL http://strimmerlab.org/software/st/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("st")

Popular man pages

choedata: A Subset of the Choe et al. (2005) "Golden Spike" Experiment
cst.stat: Correlation-Shared t-Statistic
diffmean.stat: Difference of Means ("Fold Change") and Rank Products...
lait.stat: Correlation-Predicted t-Statistic
shrinkcat.stat: Correlation-Adjusted t Score (CAT score)
st-internal: Internal st Functions
st.package: The st package
See all...

All man pages Function index File listing

Man pages

choedata: A Subset of the Choe et al. (2005) "Golden Spike" Experiment
cst.stat: Correlation-Shared t-Statistic
diffmean.stat: Difference of Means ("Fold Change") and Rank Products...
lait.stat: Correlation-Predicted t-Statistic
regularizedt: Various (Regularized) t Statistics
shrinkcat.stat: Correlation-Adjusted t Score (CAT score)
shrinkt.stat: The Shrinkage t Statistic
st-internal: Internal st Functions
st.package: The st package
studentt.stat: (Paired) Student t Statistic

Functions

choe2.degenes Man page
choe2.mapping Man page
choe2.probe.name Man page
choe2.L Man page
choe2.mat Man page
choe2.symbol.name Man page
cst.fun Man page Source code
cst.stat Man page Source code
diffmean.fun Man page Source code
diffmean.stat Man page Source code
efront.fun Man page Source code
efront.stat Man page Source code
lai.tscore Man page Source code
lait.fun Man page Source code
lait.stat Man page Source code
modt.fun Man page Source code
modt.stat Man page Source code
pvt.groupcat Man page
pvt.pairX Source code
pvt.samL1.get.lambda Man page Source code
rankprod.fun Man page Source code
rankprod.stat Man page Source code
sam.fun Man page Source code
sam.stat Man page Source code
samL1.fun Man page Source code
samL1.stat Man page Source code
shrinkcat.fun Man page Source code
shrinkcat.stat Man page Source code
shrinkt.fun Man page Source code
shrinkt.stat Man page Source code
st-package Man page
studentt.fun Man page Source code
studentt.stat Man page Source code

Files

NAMESPACE
NEWS
data
data/choedata.rda
R
R/samL1.R
R/cst.R
R/studentt.R
R/modt.R
R/efront.R
R/sam.R
R/lait.R
R/rankprod.stat.R
R/shrinkcat.R
R/shrinkt.R
MD5
DESCRIPTION
man
man/shrinkt.stat.Rd
man/choedata.Rd
man/cst.stat.Rd
man/diffmean.stat.Rd
man/st-internal.Rd
man/st.package.Rd
man/studentt.stat.Rd
man/shrinkcat.stat.Rd
man/regularizedt.Rd
man/lait.stat.Rd
st documentation built on May 19, 2017, 6:18 p.m.

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