st: Shrinkage t Statistic and Correlation-Adjusted t-Score

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Implements the "shrinkage t" statistic introduced in Opgen-Rhein and Strimmer (2007) and a shrinkage estimate of the "correlation-adjusted t-score" (CAT score) described in Zuber and Strimmer (2009). It also offers a convenient interface to a number of other regularized t-statistics commonly employed in high-dimensional case-control studies.

Author
Rainer Opgen-Rhein, Verena Zuber, and Korbinian Strimmer.
Date of publication
2015-07-08 22:37:28
Maintainer
Korbinian Strimmer <strimmerlab@gmail.com>
License
GPL (>= 3)
Version
1.2.5
URLs

View on CRAN

Man pages

choedata
A Subset of the Choe et al. (2005) "Golden Spike" Experiment
cst.stat
Correlation-Shared t-Statistic
diffmean.stat
Difference of Means ("Fold Change") and Rank Products...
lait.stat
Correlation-Predicted t-Statistic
regularizedt
Various (Regularized) t Statistics
shrinkcat.stat
Correlation-Adjusted t Score (CAT score)
shrinkt.stat
The Shrinkage t Statistic
st-internal
Internal st Functions
st.package
The st package
studentt.stat
(Paired) Student t Statistic

Files in this package

st
st/NAMESPACE
st/NEWS
st/data
st/data/choedata.rda
st/R
st/R/samL1.R
st/R/cst.R
st/R/studentt.R
st/R/modt.R
st/R/efront.R
st/R/sam.R
st/R/lait.R
st/R/rankprod.stat.R
st/R/shrinkcat.R
st/R/shrinkt.R
st/MD5
st/DESCRIPTION
st/man
st/man/shrinkt.stat.Rd
st/man/choedata.Rd
st/man/cst.stat.Rd
st/man/diffmean.stat.Rd
st/man/st-internal.Rd
st/man/st.package.Rd
st/man/studentt.stat.Rd
st/man/shrinkcat.stat.Rd
st/man/regularizedt.Rd
st/man/lait.stat.Rd