plot-report_mig_interannual-missing-method: Plot method for report_mig_interannual
In stacomiR: Fish Migration Monitoring

plot,report_mig_interannual,missing-method

R Documentation

Plot method for report_mig_interannual

Description

Several of these plots are scaled against the same year,i.e.the comparison is based on year 2000, meaning that day 1 would correspond to the first date of 2000, which is also a saturday, the last day of the week.

Usage

## S4 method for signature 'report_mig_interannual,missing'
plot(
  x,
  plot.type = "standard",
  timesplit = "month",
  year_choice = NULL,
  alpha = 1,
  silent = FALSE
)

Arguments

`x`	An object of class report_mig_interannual-class
`plot.type`	Default standard
`timesplit`	Used for plot.type barchart or dotplot, Default month other possible values are day, week, 2 weeks, month French values "jour" "semaine" "quinzaine" "mois" are also accepted.
`year_choice`	The year chosen to calculate statistics which will be plotted against the historical series, should be a character vector of length one e.g. '2012', default NULL, when NULL the latest year is selected.
`alpha`	argument passed when plot.type=barchart, pointrange, standard default 1
`silent`	Stops displaying the messages. plot.type="line" One line per daily report_mig, a reference year is highlighted with year_choice, this graph does not react to argument timesplit plot.type="standard" The year selected in year_choice is displayed against a ribbon of historical values plot.type="density" Creates density plot to compare seasonality, data computed by 15 days period, this graph ignore the timesplit argument plot.type="step" Creates step plots to compare seasonality, the year chosen in year_choice (or the interface if silent =FALSE, and year_choice=NULL, is the latest if silent=TRUE, or it can be selected in the droplist. It is highlighted against the other with a dotted line plot.type="barchart" Comparison of daily migration of one year against periodic migration for the other years available in the chronicle, different periods can be chosen with argument timesplit plot.type="pointrange" Pointrange graphs, different periods can be chosen with argument timesplit plot.type="seasonal" Plot to display summary statistics about the migration period, different periods can be chosen with argument timesplit, this graph ignores argument year_choice