Man pages for starmie
Population Structure Model Inference and Visualisation

admixConstructor for admix object
admixListContructor for admixList
averagePairWiseSimilarityHAverage Q matrices.
averageQAverage Q matrices.
bestKDetermine a suitable K value from multiple Structure runs
clumpakRun the CLUMPP algorithms.
clumppRun the CLUMPP algorithms.
exampleAdmixtureExample admixture runs
exampleStructureExample structure objects
getClusterAlleleFreqMatRetrieve estimated within-cluster allele frequencies
getCompleteAlleleFreqMatRetrieve estimated population allele frequencies
getDAccessor methods for struct objects
getKRetrieve the assumed number of populations from 'struct' or...
getQRetrieve Q matrix from 'struct' or 'admix' objects.
getStephensUse the Stephen's method to permute sample labels
loadAdmixtureRead Admixture Output
loadStructureRead Structure Output
plotBarGenerate a barplot of a Structure or Admixture run.
plotMCMCPlot STRUCTURE MCMC chains
plotMDSPlot principal coordinates from Q-matrix, struct or admix...
plotMultiKGenerate a barplot for multiple values of K..
plotTreeBarGenerate a barplot of a Structure or Admixture run.
runStructureRun STRUCTURE in current path
structConstructor for struct object
structListConstructor for a structList object
starmie documentation built on May 1, 2019, 8:01 p.m.