clumpp: Run the CLUMPP algorithms.

In starmie: Population Structure Model Inference and Visualisation

Description

Run the CLUMPP algorithms.

Usage

clumpp(Q_list, method = "greedy", iter = 100)

Arguments

Q_list	A list of of Q matrices.
method	The algorithm to use to infer the correct permutations. One of 'greedy' or 'greedyLargeK' or 'stephens'
iter	The number of iterations to use if running either 'greedy' or 'greedyLargeK'

Examples

# use multiple K=3 runs
cl_data <- exampleStructure("clumpp")
print(cl_data)
Q_list <- lapply(cl_data, getQ)
clumppy <- clumpp(Q_list)

starmie documentation built on May 1, 2019, 8:01 p.m.