Files in statgenIBD
Calculation of IBD Probabilities
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
cleanup
R/RcppExports.R
R/writeIBDs.R
R/allGenoPlot.R
R/readIBDs.R
R/IBDprob.R
R/singleGenoPlot.R
R/totalCoveragePlot.R
R/meanProbsPlot.R
R/readRABBIT.R
R/statgenIBD.R
R/writeFlapjack.R
R/zzz.R
R/reexport.R
R/getProbs.R
R/pedPlot.R
R/utils.R
src/Makevars
src/RcppExports.cpp
src/calcIBD.cpp
src/pedigree/mainR.h
src/pedigree/analysis_fam.h
src/pedigree/markerscore.cpp
src/pedigree/mainR.cpp
src/pedigree/Loc.h
src/pedigree/Loc.cpp
src/pedigree/markerscore.h
src/pedigree/crosses.h
src/pedigree/read_map.cpp
src/pedigree/analysis_fam.cpp
src/pedigree/read_map.h
src/pedigree/popt.h
src/pedigree/crosses.cpp
src/pedigree/popt.cpp
src/general/util_genetics.cpp
src/general/convert.h
src/general/TransMatSym2D.h
src/general/matvec.h
src/general/OrdGeno.cpp
src/general/TransMatSym2D.cpp
src/general/HMMalgo.h
src/general/misc.cpp
src/general/util_genetics.h
src/general/ibdexcept.cpp
src/general/ibdexcept.h
src/general/OrdGeno.h
src/general/InhVector.h
src/general/misc.h
src/general/HMMalgo.cpp
src/general/InhVector.cpp
inst/doc/IBDCalculations.R
inst/doc/IBDCalculations.Rmd
inst/doc/IBDCalculations.html
inst/doc/IBDFileFormat.R
inst/doc/IBDFileFormat.Rmd
inst/doc/IBDFileFormat.html
inst/extdata/SxM/SxM_eval.txt
inst/extdata/SxM/SxM_IBDs.txt
inst/extdata/SxM/SxM_geno.txt
inst/extdata/SxM/SxM_pheno.csv
inst/extdata/SxM/SxM_map.txt
inst/extdata/barley/barley_magicReconstruct.zip
inst/extdata/barley/barley_pedInfo.csv
inst/extdata/popC4S3/cross.txt
inst/extdata/popC4S3/mapfile.txt
inst/extdata/multipop/mapfile.txt
inst/extdata/multipop/AxC.txt
inst/extdata/multipop/AxB.txt
inst/extdata/popF4/cross.txt
inst/extdata/popF4/mapfile.txt
inst/tinytest/test_writeFlapjack.R
inst/tinytest/test_writeIBDs.R
inst/tinytest/SxMIBD_pedigree
inst/tinytest/test_readIBDs.R
inst/tinytest/test_calcIBD.R
inst/tinytest/AB_M1_1
inst/tinytest/test_c.R
inst/tinytest/example_magicreconstruct_ancestry.csv.gz
inst/tinytest/SxMIBD_evalPosChr
inst/tinytest/SxMIBD_evalPos
inst/tinytest/test_readRABBIT.R
inst/tinytest/SxMIBD_map
inst/tinytest/SxMIBD_markers
inst/tinytest/test_IBDprob.R
inst/tinytest/test_getProbs.R
inst/tinytest/example_ped.csv
inst/tinytest/ABC_markers
inst/tinytest/SxMIBD_evalDist
inst/tinytest/popBC3/markers.txt
inst/tinytest/popBC3/map.txt
inst/tinytest/popC3S4DH/markers.txt
inst/tinytest/popC3S4DH/map.txt
inst/tinytest/popC3S4/markers.txt
inst/tinytest/popC3S4/map.txt
inst/tinytest/popDH/markers.txt
inst/tinytest/popDH/map.txt
inst/tinytest/popC3DH/markers.txt
inst/tinytest/popC3DH/map.txt
inst/tinytest/popC4DH/markers.txt
inst/tinytest/popC4DH/map.txt
inst/tinytest/popC4/markers.txt
inst/tinytest/popC4/map.txt
inst/tinytest/popC3/markers.txt
inst/tinytest/popC3/map.txt
inst/tinytest/popBC1S2DH/markers.txt
inst/tinytest/popBC1S2DH/map.txt
inst/tinytest/popC4S3DH/markers.txt
inst/tinytest/popC4S3DH/map.txt
inst/tinytest/popF4DH/markers.txt
inst/tinytest/popF4DH/map.txt
inst/tinytest/popC4S3/markers.txt
inst/tinytest/popC4S3/map.txt
inst/tinytest/popBC1S2/markers.txt
inst/tinytest/popBC1S2/map.txt
inst/tinytest/popBC3DH/markers.txt
inst/tinytest/popBC3DH/map.txt
inst/tinytest/popF4/markers.txt
inst/tinytest/popF4/map.txt
build/vignette.rds
build/partial.rdb
tests/tinytest.R
vignettes/bibliography.bib
vignettes/IBDCalculations.Rmd
vignettes/SxM_flapjack.png
vignettes/IBDFileFormat.Rmd
man/readRABBIT.Rd
man/pedPlot.Rd
man/readIBDs.Rd
man/writeFlapjack.Rd
man/writeIBDs.Rd
man/plot.IBDprob.Rd
man/getProbs.Rd
man/calcIBD.Rd
man/c.IBDprob.Rd
man/singleGenoPlot.Rd
man/statgenIBD-package.Rd
man/summary.IBDprob.Rd
man/allGenoPlot.Rd
man/figures/logo.png
