structSSI: Multiple Testing for Hypotheses with Hierarchical or Group Structure

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Performs multiple testing corrections that take specific structure of hypotheses into account.

Author
Kris Sankaran
Date of publication
2015-05-05 06:57:32
Maintainer
Kris Sankaran <kriss1@stanford.edu>
License
GPL-2
Version
1.1.1

View on CRAN

Man pages

Adaptive.GBH
Adaptive Group Benjamini-Hochberg Procedure
chlamydiae
Chlamydiae Sub-Taxa of Global Patterns Data
EstimatedHFDRControl
Estimate FDR control variations for HFDR procedure
estimate.pi0
Estimation of Proportion of Null Hypotheses among p-values
GBH-class
Class '"GBH"'
gtemp
Global mean land-ocean temperature deviations
hFDR.adjust
FDR Controlling Procedure for Hierarchically Structured...
hypothesesTree
Class '"hypothesesTree"'
Oracle.GBH
Oracle Group Benjamini-Hochberg Correction
structSSI-internal
Internal structSSI Functions
structSSI-package
Structured Simultaneous and Selective Inference for Grouped...
treePValues
Create tree of p-values for phyloseq data

Files in this package

structSSI
structSSI/inst
structSSI/inst/CITATION
structSSI/tests
structSSI/tests/testGBHProcedures.R
structSSI/tests/testHierarchicalMethods.R
structSSI/NAMESPACE
structSSI/data
structSSI/data/gtemp.txt
structSSI/data/chlamydiae.rda
structSSI/R
structSSI/R/PlotHypTree.R
structSSI/R/hFDR.adjust.R
structSSI/R/gbh_definition.R
structSSI/R/validHypothesesTree.R
structSSI/R/Oracle.GBH.R
structSSI/R/pi0.tail.p.R
structSSI/R/pi0.lsl.R
structSSI/R/estimate.pi0.R
structSSI/R/Adaptive.GBH.R
structSSI/R/treePValues.R
structSSI/R/hFDR.internal.R
structSSI/R/ListTreePval.R
structSSI/R/tree_definition.R
structSSI/R/BuildEdgelist.R
structSSI/R/pi0.tst.R
structSSI/R/FindRoot.R
structSSI/R/EstimatedHFDRControl.R
structSSI/R/stepUp.R
structSSI/R/HypTreeJSON.R
structSSI/R/SignificanceStars.R
structSSI/README.md
structSSI/MD5
structSSI/DESCRIPTION
structSSI/man
structSSI/man/gtemp.Rd
structSSI/man/Adaptive.GBH.Rd
structSSI/man/estimate.pi0.Rd
structSSI/man/hypothesesTree.Rd
structSSI/man/treePValues.Rd
structSSI/man/Oracle.GBH.Rd
structSSI/man/structSSI-internal.Rd
structSSI/man/structSSI-package.Rd
structSSI/man/chlamydiae.Rd
structSSI/man/GBH-class.Rd
structSSI/man/EstimatedHFDRControl.Rd
structSSI/man/hFDR.adjust.Rd